Johannes Rainer (@jorainer)
github

jorainer

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  • Stars
    star
    135
  • Global Rank 166,572 (Top 6 %)
  • Followers 173
  • Following 21
  • Registered about 11 years ago
  • Most used languages
    R
         52.4 %
    TeX
         19.0 %
    HTML
         14.3 %
    CSS
         4.8 %
    C++
         4.8 %
    Perl
         4.8 %
  • Location 🇮🇹 Italy
  • Country Total Rank 1,543
  • Country Ranking
    R
         14
    TeX
         26
    Perl
         93
    HTML
         121
    CSS
         418
    C++
         2,179

Top repositories

1

ensembldb

This is the ensembldb development repository.
R
33
star
2

metabolomics2018

Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
HTML
26
star
3

SpectraTutorials

These workshops and tutorials provide use cases and examples for mass spectrometry data handling and analysis using the Spectra Bioconductor package.
TeX
18
star
4

atc

This package provides the Anatomical Therapeutical Chemical (ATC) Classification data from WHOCC and implements functions that facilitate working with these.
R
15
star
5

MetaboAnnotationTutorials

Examples and tutorials for the MetaboAnnotation, MetaboCoreUtils and CompoundDb R packages
TeX
7
star
6

xcmsTutorials

Tutorials and workshops describing LC-MS(/MS) data pre-processing and analysis using the xcms Bioconductor package
TeX
5
star
7

xcms-gnps-tools

Utility functions for the use of xcms with GNPS
R
5
star
8

Bioc2016-ensembldb

Presentation for the BioC 2016 conference in Stanford
CSS
3
star
9

Gviz

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/Gviz.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=Gviz.
R
3
star
10

metabolomics2023

Contribution to the Metabolomics 2023 conference of the Metabolomics Society
2
star
11

swemsa_2019

Talk for the SWEMSA 2019 conference/workshop
HTML
2
star
12

spectra_workshop

Workshop about the RforMassSpectrometry Spectra R package.
HTML
2
star
13

AHEnsDbs

Supplies AnnotationHub with EnsDb Ensembl-based annotation databases for all species.
R
1
star
14

CompoundDb.Hsapiens.HMDB.4.0

HMDB (http://www.hmdb.ca) compound database for PeakABro (https://github.com/stanstrup/PeakABro)
R
1
star
15

org-mode-notes

Some notes on how to use org-mode for literature programming and enable export of org files to Rmd format to be used with rmarkdown.
1
star
16

EuroBioc2017-MSnbase

Slides for the flashlight talk about on-the-fly data access and MS write support added to mzR/MSnbase/xcms for the European Bioconductor Developer Meeting 2017 in Cambridge, UK.
TeX
1
star
17

Ensembl-Exon-probemapping

Perl scripts to create custom CDF files and packages for Affymetrix microarrays.
Perl
1
star
18

TimeAlarms

Slightly modified of the TimeAlarms arduino library (http://www.pjrc.com/teensy/td_libs_TimeAlarms.html).
C++
1
star
19

unsoRted

Unsorted R functions and utilities.
R
1
star
20

mirtarbase-db

R package providing the validate miRNA-target gene interactions (MTIs) from the miRTarBase database.
R
1
star
21

xcmsExtensions

Collection of methods and functions extending the functionality of the xcms Bioconductor package.
R
1
star
22

AHMassBank

MassBank metadata for AnnotationHub
R
1
star
23

EuroBioC2024

Contribution to the EuroBioC2024 conference
1
star
24

EnsDb.Hsapiens.v75

EnsDb database containing Ensembl based human gene/transcript annotations for Ensembl version 75. This repository represents the developmental version of the official package from Bioconductor http://www.bioconductor.org/packages/EnsDb.Hsapiens.v75
R
1
star