jorainer/EuroBioC2024

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jorainer/EuroBioC2024

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Contribution to the EuroBioC2024 conference

ensembldb

This is the ensembldb development repository.

metabolomics2018

Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.

SpectraTutorials

These workshops and tutorials provide use cases and examples for mass spectrometry data handling and analysis using the Spectra Bioconductor package.

atc

This package provides the Anatomical Therapeutical Chemical (ATC) Classification data from WHOCC and implements functions that facilitate working with these.

MetaboAnnotationTutorials

Examples and tutorials for the MetaboAnnotation, MetaboCoreUtils and CompoundDb R packages

xcmsTutorials

Tutorials and workshops describing LC-MS(/MS) data pre-processing and analysis using the xcms Bioconductor package

xcms-gnps-tools

Utility functions for the use of xcms with GNPS

Bioc2016-ensembldb

Presentation for the BioC 2016 conference in Stanford

Gviz

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/Gviz.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=Gviz.

metabolomics2023

Contribution to the Metabolomics 2023 conference of the Metabolomics Society

swemsa_2019

Talk for the SWEMSA 2019 conference/workshop

spectra_workshop

Workshop about the RforMassSpectrometry Spectra R package.

AHEnsDbs

Supplies AnnotationHub with EnsDb Ensembl-based annotation databases for all species.

CompoundDb.Hsapiens.HMDB.4.0

HMDB (http://www.hmdb.ca) compound database for PeakABro (https://github.com/stanstrup/PeakABro)

org-mode-notes

Some notes on how to use org-mode for literature programming and enable export of org files to Rmd format to be used with rmarkdown.

EuroBioc2017-MSnbase

Slides for the flashlight talk about on-the-fly data access and MS write support added to mzR/MSnbase/xcms for the European Bioconductor Developer Meeting 2017 in Cambridge, UK.

Ensembl-Exon-probemapping

Perl scripts to create custom CDF files and packages for Affymetrix microarrays.

TimeAlarms

Slightly modified of the TimeAlarms arduino library (http://www.pjrc.com/teensy/td_libs_TimeAlarms.html).

unsoRted

Unsorted R functions and utilities.

mirtarbase-db

R package providing the validate miRNA-target gene interactions (MTIs) from the miRTarBase database.

xcmsExtensions

Collection of methods and functions extending the functionality of the xcms Bioconductor package.

AHMassBank

MassBank metadata for AnnotationHub

EnsDb.Hsapiens.v75

EnsDb database containing Ensembl based human gene/transcript annotations for Ensembl version 75. This repository represents the developmental version of the official package from Bioconductor http://www.bioconductor.org/packages/EnsDb.Hsapiens.v75