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ensembldb
This is the ensembldb development repository.metabolomics2018
Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.SpectraTutorials
These workshops and tutorials provide use cases and examples for mass spectrometry data handling and analysis using the Spectra Bioconductor package.atc
This package provides the Anatomical Therapeutical Chemical (ATC) Classification data from WHOCC and implements functions that facilitate working with these.MetaboAnnotationTutorials
Examples and tutorials for the MetaboAnnotation, MetaboCoreUtils and CompoundDb R packagesxcmsTutorials
Tutorials and workshops describing LC-MS(/MS) data pre-processing and analysis using the xcms Bioconductor packagexcms-gnps-tools
Utility functions for the use of xcms with GNPSBioc2016-ensembldb
Presentation for the BioC 2016 conference in Stanfordmetabolomics2023
Contribution to the Metabolomics 2023 conference of the Metabolomics Societyswemsa_2019
Talk for the SWEMSA 2019 conference/workshopspectra_workshop
Workshop about the RforMassSpectrometry Spectra R package.AHEnsDbs
Supplies AnnotationHub with EnsDb Ensembl-based annotation databases for all species.CompoundDb.Hsapiens.HMDB.4.0
HMDB (http://www.hmdb.ca) compound database for PeakABro (https://github.com/stanstrup/PeakABro)org-mode-notes
Some notes on how to use org-mode for literature programming and enable export of org files to Rmd format to be used with rmarkdown.EuroBioc2017-MSnbase
Slides for the flashlight talk about on-the-fly data access and MS write support added to mzR/MSnbase/xcms for the European Bioconductor Developer Meeting 2017 in Cambridge, UK.Ensembl-Exon-probemapping
Perl scripts to create custom CDF files and packages for Affymetrix microarrays.TimeAlarms
Slightly modified of the TimeAlarms arduino library (http://www.pjrc.com/teensy/td_libs_TimeAlarms.html).unsoRted
Unsorted R functions and utilities.mirtarbase-db
R package providing the validate miRNA-target gene interactions (MTIs) from the miRTarBase database.xcmsExtensions
Collection of methods and functions extending the functionality of the xcms Bioconductor package.AHMassBank
MassBank metadata for AnnotationHubEuroBioC2024
Contribution to the EuroBioC2024 conferenceEnsDb.Hsapiens.v75
EnsDb database containing Ensembl based human gene/transcript annotations for Ensembl version 75. This repository represents the developmental version of the official package from Bioconductor http://www.bioconductor.org/packages/EnsDb.Hsapiens.v75Love Open Source and this site? Check out how you can help us