Martin Petr (@bodkan)
github

bodkan

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Top repositories

1

slendr

Population genetic simulations in R 🌍
R
52
star
2

admixr

An R package for reproducible and automated ADMIXTOOLS analyses
R
25
star
3

demografr

Fast and simple population genetics inference using tree sequences in R
R
23
star
4

archaic-ychr

Repository of code for the paper "The evolutionary history of Neandertal and Denisovan Y chromosomes" by Petr et al.
Jupyter Notebook
9
star
5

ku-popgen2022

Lecture notes and materials on simulations for the 2022 popgen course at Copenhagen University
HTML
8
star
6

vcf2eigenstrat

A simple shell script for VCF -> EIGENSTRAT conversion
Shell
5
star
7

nea-over-time

Source code and Jupyter notebooks for the paper: "The limits of long-term selection against Neandertal introgression"
HTML
5
star
8

adventofcode2021

πŸŽ„ Advent of Code 2021 in R πŸŽ„
R
3
star
9

bam-caller

A simple Python CLI program for calling pseudo-haploid genotypes from BAM files
Python
2
star
10

ku-popgen2023

Lecture notes and materials on simulations for the 2023 popgen course at Copenhagen University
HTML
1
star
11

slimr

R package for parsing, processing and analysing SLiM output files.
R
1
star
12

probgen2022

Interactive code examples from the ProbGen 2022 slendr poster
R
1
star
13

smbe2021

Companion repository for the SMBE 2021 poster "A framework for simulating spatio-temporal population genomic data on a real geographic landscape"
R
1
star
14

mpieva-slendr-2023

Gentle introduction to population genetic simulations at MPI EVA (2023)
HTML
1
star