bodkan/mpieva-slendr-2023

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bodkan/mpieva-slendr-2023

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Gentle introduction to population genetic simulations at MPI EVA (2023)

slendr

Population genetic simulations in R 🌍

admixr

An R package for reproducible and automated ADMIXTOOLS analyses

demografr

Fast and simple population genetics inference using tree sequences in R

archaic-ychr

Repository of code for the paper "The evolutionary history of Neandertal and Denisovan Y chromosomes" by Petr et al.

Jupyter Notebook

ku-popgen2022

Lecture notes and materials on simulations for the 2022 popgen course at Copenhagen University

vcf2eigenstrat

A simple shell script for VCF -> EIGENSTRAT conversion

nea-over-time

Source code and Jupyter notebooks for the paper: "The limits of long-term selection against Neandertal introgression"

adventofcode2021

🎄 Advent of Code 2021 in R 🎄

bam-caller

A simple Python CLI program for calling pseudo-haploid genotypes from BAM files

ku-popgen2023

Lecture notes and materials on simulations for the 2023 popgen course at Copenhagen University

slimr

R package for parsing, processing and analysing SLiM output files.

probgen2022

Interactive code examples from the ProbGen 2022 slendr poster

smbe2021

Companion repository for the SMBE 2021 poster "A framework for simulating spatio-temporal population genomic data on a real geographic landscape"