bodkan/probgen2022

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bodkan/probgen2022

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Interactive code examples from the ProbGen 2022 slendr poster

slendr

Population genetic simulations in R 🌍

admixr

An R package for reproducible and automated ADMIXTOOLS analyses

demografr

Fast and simple population genetics inference using tree sequences in R

archaic-ychr

Repository of code for the paper "The evolutionary history of Neandertal and Denisovan Y chromosomes" by Petr et al.

Jupyter Notebook

ku-popgen2022

Lecture notes and materials on simulations for the 2022 popgen course at Copenhagen University

vcf2eigenstrat

A simple shell script for VCF -> EIGENSTRAT conversion

nea-over-time

Source code and Jupyter notebooks for the paper: "The limits of long-term selection against Neandertal introgression"

adventofcode2021

🎄 Advent of Code 2021 in R 🎄

bam-caller

A simple Python CLI program for calling pseudo-haploid genotypes from BAM files

ku-popgen2023

Lecture notes and materials on simulations for the 2023 popgen course at Copenhagen University

slimr

R package for parsing, processing and analysing SLiM output files.

smbe2021

Companion repository for the SMBE 2021 poster "A framework for simulating spatio-temporal population genomic data on a real geographic landscape"

mpieva-slendr-2023

Gentle introduction to population genetic simulations at MPI EVA (2023)