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slendr
Population genetic simulations in R πadmixr
An R package for reproducible and automated ADMIXTOOLS analysesdemografr
Fast and simple population genetics inference using tree sequences in Rarchaic-ychr
Repository of code for the paper "The evolutionary history of Neandertal and Denisovan Y chromosomes" by Petr et al.ku-popgen2022
Lecture notes and materials on simulations for the 2022 popgen course at Copenhagen Universityvcf2eigenstrat
A simple shell script for VCF -> EIGENSTRAT conversionnea-over-time
Source code and Jupyter notebooks for the paper: "The limits of long-term selection against Neandertal introgression"bam-caller
A simple Python CLI program for calling pseudo-haploid genotypes from BAM filesku-popgen2023
Lecture notes and materials on simulations for the 2023 popgen course at Copenhagen Universityslimr
R package for parsing, processing and analysing SLiM output files.probgen2022
Interactive code examples from the ProbGen 2022 slendr postersmbe2021
Companion repository for the SMBE 2021 poster "A framework for simulating spatio-temporal population genomic data on a real geographic landscape"mpieva-slendr-2023
Gentle introduction to population genetic simulations at MPI EVA (2023)Love Open Source and this site? Check out how you can help us