Hannes Stärk (@HannesStark)
github

HannesStark

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Top repositories

1

EquiBind

EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
Python
473
star
2

3DInfomax

Making self-supervised learning work on molecules by using their 3D geometry to pre-train GNNs. Implemented in DGL and Pytorch Geometric.
Python
149
star
3

FlowSite

Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding Site Design"
Python
83
star
4

dirichlet-flow-matching

Python
75
star
5

SMPL-NeRF

Embed human pose information into neural radiance fields (NeRF) to render images of humans in desired poses 🏃 from novel views
Python
58
star
6

protein-localization

Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of proteins 🔬
Jupyter Notebook
54
star
7

gnn-reinforcement-learning

Representing robots as graphs for reinforcement-learning in PyBullet locomotion environments.
Jupyter Notebook
26
star
8

hannes-stark

Code for my website built with Angular and running on GitHub Pages.
HTML
13
star
9

GNN-primer

Jupyter Notebook
8
star
10

CodonMPNN

Python
6
star
11

attention-to-binding-sites

Unsupervised method for binding site prediction using attention patterns of protein language models.
Jupyter Notebook
3
star
12

molecule-ELECTRA

Pre-train and evaluate Graph Neural Networks or Transformers on molecules with the ELECTRA method.
Python
3
star
13

audioImprovement

Removing background noise from clips of speech and improving audio quality (PyTorch)
Python
3
star
14

genie

Python
2
star
15

bachelorThesis

TensorFlow code and LaTex for Bachelor Thesis: Understanding Variational Autoencoders' Latent Representations of Remote Sensing Images 🌍
TeX
1
star
16

ec-number-prediction

Using similarity in embedding space for predicting EC numbers
Jupyter Notebook
1
star
17

dependencyNodeRanking

R code for NetworkCentralityCalculator. A web-tool with 5 different centrality measures. LaTex and pdf for documentation and explanation of different measures with a focus on "dependency centrality".
TeX
1
star
18

logag

1
star
19

HannesStark

1
star