• Stars
    star
    1
  • Language
    Jupyter Notebook
  • Created about 4 years ago
  • Updated almost 4 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Using similarity in embedding space for predicting EC numbers

More Repositories

1

EquiBind

EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
Python
473
star
2

3DInfomax

Making self-supervised learning work on molecules by using their 3D geometry to pre-train GNNs. Implemented in DGL and Pytorch Geometric.
Python
149
star
3

FlowSite

Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding Site Design"
Python
83
star
4

dirichlet-flow-matching

Python
75
star
5

SMPL-NeRF

Embed human pose information into neural radiance fields (NeRF) to render images of humans in desired poses πŸƒ from novel views
Python
58
star
6

protein-localization

Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of proteins πŸ”¬
Jupyter Notebook
54
star
7

gnn-reinforcement-learning

Representing robots as graphs for reinforcement-learning in PyBullet locomotion environments.
Jupyter Notebook
26
star
8

hannes-stark

Code for my website built with Angular and running on GitHub Pages.
HTML
13
star
9

GNN-primer

Jupyter Notebook
8
star
10

CodonMPNN

Python
6
star
11

attention-to-binding-sites

Unsupervised method for binding site prediction using attention patterns of protein language models.
Jupyter Notebook
3
star
12

molecule-ELECTRA

Pre-train and evaluate Graph Neural Networks or Transformers on molecules with the ELECTRA method.
Python
3
star
13

audioImprovement

Removing background noise from clips of speech and improving audio quality (PyTorch)
Python
3
star
14

genie

Python
2
star
15

bachelorThesis

TensorFlow code and LaTex for Bachelor Thesis: Understanding Variational Autoencoders' Latent Representations of Remote Sensing Images 🌍
TeX
1
star
16

dependencyNodeRanking

R code for NetworkCentralityCalculator. A web-tool with 5 different centrality measures. LaTex and pdf for documentation and explanation of different measures with a focus on "dependency centrality".
TeX
1
star
17

logag

1
star
18

HannesStark

1
star