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blacktie
Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipelinetable_enforcer
Table Enforcer is my attempt to apply a sort of "test driven development" workflow to data cleaning and validation. A python package to facilitate the iterative process of developing and using schema-like representations of DataFrames in pandas for recoding and validating instances of these data.cookiecutter-snakemake-analysis-pipeline
A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.Combinatorics
This set of basic combinatorics functions supplements Python's itertools module.rSeqPipeline
personal RNAseq analysis pipeline for the labscipherPyProj
Collection of bioinformatic python code.conda-package-repo
This is a site to host my self-built conda packages for cross location installations.BiBench
BiBench is a Python library designed to simplify biclustering tasks.extract-genome-region
Given a CSV file of variable information defining the regions of interest, return a file that contains a fasta-formatted representation of these regions.snaketools
gatk-best-practices-interpretation
gusPyProj
spartan
A spartan bioinformatics package, providing only the essentials and nothing fancy or luxurious. Enough to get the job done quickly without flourish.customTAMO
Repo for my changes to the TAMO frameworkLove Open Source and this site? Check out how you can help us