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blacktie
Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipelinetable_enforcer
Table Enforcer is my attempt to apply a sort of "test driven development" workflow to data cleaning and validation. A python package to facilitate the iterative process of developing and using schema-like representations of DataFrames in pandas for recoding and validating instances of these data.cookiecutter-snakemake-analysis-pipeline
A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.Combinatorics
This set of basic combinatorics functions supplements Python's itertools module.rSeqPipeline
personal RNAseq analysis pipeline for the labscipherPyProj
Collection of bioinformatic python code.conda-package-repo
This is a site to host my self-built conda packages for cross location installations.BiBench
BiBench is a Python library designed to simplify biclustering tasks.extract-genome-region
Given a CSV file of variable information defining the regions of interest, return a file that contains a fasta-formatted representation of these regions.snaketools
gatk-best-practices-interpretation
gusPyProj
spartan
A spartan bioinformatics package, providing only the essentials and nothing fancy or luxurious. Enough to get the job done quickly without flourish.gProj
A personal project management application based on task inputs/outputs rather than timelines. /*NOT ready for consumption*/Love Open Source and this site? Check out how you can help us