xguse/conda-package-repo

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xguse/conda-package-repo

xguse

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This is a site to host my self-built conda packages for cross location installations.

blacktie

Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline

table_enforcer

Table Enforcer is my attempt to apply a sort of "test driven development" workflow to data cleaning and validation. A python package to facilitate the iterative process of developing and using schema-like representations of DataFrames in pandas for recoding and validating instances of these data.

cookiecutter-snakemake-analysis-pipeline

A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.

Combinatorics

This set of basic combinatorics functions supplements Python's itertools module.

rSeqPipeline

personal RNAseq analysis pipeline for the lab

scipherPyProj

Collection of bioinformatic python code.

BiBench

BiBench is a Python library designed to simplify biclustering tasks.

extract-genome-region

Given a CSV file of variable information defining the regions of interest, return a file that contains a fasta-formatted representation of these regions.

snaketools

gatk-best-practices-interpretation

gusPyProj

spartan

A spartan bioinformatics package, providing only the essentials and nothing fancy or luxurious. Enough to get the job done quickly without flourish.

gProj

A personal project management application based on task inputs/outputs rather than timelines. /*NOT ready for consumption*/

customTAMO

Repo for my changes to the TAMO framework