• Stars
    star
    3
  • Rank 3,963,521 (Top 79 %)
  • Language
    Perl
  • Created about 6 years ago
  • Updated over 5 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Software contributed by Trinity community users to facilitate studies of Trinity-assembled transcriptomes.

More Repositories

1

trinityrnaseq

Trinity RNA-Seq de novo transcriptome assembly
Perl
831
star
2

RNASeq_Trinity_Tuxedo_Workshop

materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.
Perl
45
star
3

KrumlovTrinityWorkshopJan2016

Trinity & Trinotate workshop materials for Krumlov, Czech Republic Jan 2016
Perl
7
star
4

trinity_ext_sample_data

more extensive sample data for exploring various Trinity supported analysis modules
Go
6
star
5

BerlinTrinityWorkshop2017

workshop in Berlin, mid-June 2017
Python
6
star
6

RagonInst_Sept2017_Workshop

Trinity rna-seq workshop at the Ragon Institute, Sept. 2017
Pep8
5
star
7

TrinityFusion

TrinityFusion software
Perl
5
star
8

KrumlovTrinityWorkshopJan2020

Trinity rnaseq workshop in Cesky Krumlov, Czech Republic, Jan 2020
5
star
9

EMBOtrinityWorkshopSept2016

rnaseq workshop w/ EMBO in Sept 2016, based on the Krumlov 2016 materials
Perl
5
star
10

KrumlovTrinityWorkshopJan2019

Trinity workshop in Krumlov, Jan 2019
Pep8
4
star
11

KrumlovTrinityWorkshopJan2017

Trinity & Trinotate workshop materials for Krumlov, Czech Republic Jan 2017
Perl
4
star
12

GalaxyTrinityProtocol

Running the Trinity protocol via a Galaxy web interface.
Python
4
star
13

NaplesWorkshop2016

3
star
14

KrumlovTrinityWorkshopJan2018

Trinity RNA-Seq workshop in Krumlov 2018
Pep8
3
star
15

KrumlovTrinityWorkshopMay2022

Krumlov Trinity Workshop, May 2022
Perl
3
star
16

minigenome

makes a mini-genome, shrinks introns, useful for developing small test sets and small data sets for workshops
Perl
3
star
17

CSHLProgForBio

Python
2
star
18

bamsifter

normalizes coverage depth by position-specific read sampling in a bam file to give a target max depth
C++
2
star
19

BernWorkshop2016

workshop in Bern, Switzerland in Oct 2016
Python
2
star
20

CSHLProgForBiol2019

CSHL Prog for Bio course 2019, rna-seq section
Python
1
star
21

Inchworm

Inchworm codebase
C++
1
star
22

CSHLadvSeqTech

basic rna-seq tutorial, leveraging Trinity, StringTie, HISAT2, and IGV
1
star