@trinityrnaseq
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trinityrnaseq

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  • Stars
    star
    959
  • Global Org. Rank 15,767 (Top 6 %)
  • Registered over 10 years ago
  • Most used languages
    Perl
         45.0 %
    Python
         25.0 %
    Pep8     15.0 %
    C++
         10.0 %
    Go
         5.0 %

Top repositories

1

trinityrnaseq

Trinity RNA-Seq de novo transcriptome assembly
Perl
831
star
2

RNASeq_Trinity_Tuxedo_Workshop

materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.
Perl
45
star
3

KrumlovTrinityWorkshopJan2016

Trinity & Trinotate workshop materials for Krumlov, Czech Republic Jan 2016
Perl
7
star
4

trinity_ext_sample_data

more extensive sample data for exploring various Trinity supported analysis modules
Go
6
star
5

BerlinTrinityWorkshop2017

workshop in Berlin, mid-June 2017
Python
6
star
6

RagonInst_Sept2017_Workshop

Trinity rna-seq workshop at the Ragon Institute, Sept. 2017
Pep8
5
star
7

TrinityFusion

TrinityFusion software
Perl
5
star
8

KrumlovTrinityWorkshopJan2020

Trinity rnaseq workshop in Cesky Krumlov, Czech Republic, Jan 2020
5
star
9

EMBOtrinityWorkshopSept2016

rnaseq workshop w/ EMBO in Sept 2016, based on the Krumlov 2016 materials
Perl
5
star
10

KrumlovTrinityWorkshopJan2019

Trinity workshop in Krumlov, Jan 2019
Pep8
4
star
11

KrumlovTrinityWorkshopJan2017

Trinity & Trinotate workshop materials for Krumlov, Czech Republic Jan 2017
Perl
4
star
12

GalaxyTrinityProtocol

Running the Trinity protocol via a Galaxy web interface.
Python
4
star
13

NaplesWorkshop2016

3
star
14

KrumlovTrinityWorkshopJan2018

Trinity RNA-Seq workshop in Krumlov 2018
Pep8
3
star
15

KrumlovTrinityWorkshopMay2022

Krumlov Trinity Workshop, May 2022
Perl
3
star
16

trinity_community_codebase

Software contributed by Trinity community users to facilitate studies of Trinity-assembled transcriptomes.
Perl
3
star
17

minigenome

makes a mini-genome, shrinks introns, useful for developing small test sets and small data sets for workshops
Perl
3
star
18

CSHLProgForBio

Python
2
star
19

bamsifter

normalizes coverage depth by position-specific read sampling in a bam file to give a target max depth
C++
2
star
20

BernWorkshop2016

workshop in Bern, Switzerland in Oct 2016
Python
2
star
21

CSHLProgForBiol2019

CSHL Prog for Bio course 2019, rna-seq section
Python
1
star
22

Inchworm

Inchworm codebase
C++
1
star
23

CSHLadvSeqTech

basic rna-seq tutorial, leveraging Trinity, StringTie, HISAT2, and IGV
1
star