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trinityrnaseq
Trinity RNA-Seq de novo transcriptome assemblyRNASeq_Trinity_Tuxedo_Workshop
materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.KrumlovTrinityWorkshopJan2016
Trinity & Trinotate workshop materials for Krumlov, Czech Republic Jan 2016trinity_ext_sample_data
more extensive sample data for exploring various Trinity supported analysis modulesBerlinTrinityWorkshop2017
workshop in Berlin, mid-June 2017TrinityFusion
TrinityFusion softwareKrumlovTrinityWorkshopJan2020
Trinity rnaseq workshop in Cesky Krumlov, Czech Republic, Jan 2020EMBOtrinityWorkshopSept2016
rnaseq workshop w/ EMBO in Sept 2016, based on the Krumlov 2016 materialsKrumlovTrinityWorkshopJan2019
Trinity workshop in Krumlov, Jan 2019KrumlovTrinityWorkshopJan2017
Trinity & Trinotate workshop materials for Krumlov, Czech Republic Jan 2017GalaxyTrinityProtocol
Running the Trinity protocol via a Galaxy web interface.NaplesWorkshop2016
KrumlovTrinityWorkshopJan2018
Trinity RNA-Seq workshop in Krumlov 2018KrumlovTrinityWorkshopMay2022
Krumlov Trinity Workshop, May 2022trinity_community_codebase
Software contributed by Trinity community users to facilitate studies of Trinity-assembled transcriptomes.minigenome
makes a mini-genome, shrinks introns, useful for developing small test sets and small data sets for workshopsCSHLProgForBio
bamsifter
normalizes coverage depth by position-specific read sampling in a bam file to give a target max depthBernWorkshop2016
workshop in Bern, Switzerland in Oct 2016CSHLProgForBiol2019
CSHL Prog for Bio course 2019, rna-seq sectionInchworm
Inchworm codebaseCSHLadvSeqTech
basic rna-seq tutorial, leveraging Trinity, StringTie, HISAT2, and IGVLove Open Source and this site? Check out how you can help us