Discover thackl/cross-species-scaffolding Open Source project

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Shell
License
MIT License
Created about 8 years ago
Updated about 4 years ago

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Super-scaffolding of draft genome assemblies with in silico mate-pair libraries derived from (closely) related references

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Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2

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scripts for sequence and feature conversion, annotation, analysis ...

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Link phages and potential host by finding shared attachment sites for prophage integration

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pro-tycheposons

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scripts for working with kmers - plots, filter, ...

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Source code of my homepage & blog

HTML

lecture-variant-calling

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Benchmark data sets used to assess proovframe - frame-shift correction for long-read (meta)genomics

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plot-scripts

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google-sync

Scripts for syncing local tsv files with google spreadsheets

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Multiple dropbox accounts on linux

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Jupyter Notebook

thackl/cross-species-scaffolding

thackl

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