Discover thackl/proovframe Open Source project

Stars
30
Rank 839,658 (Top 17 %)
Language
Perl
License
MIT License
Created about 4 years ago
Updated 12 months ago

thackl

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

frame-shift correction for long-read (meta)genomics

gggenomes

A grammar of graphics for comparative genomics

588

minidot

Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2

seq-scripts

scripts for sequence and feature conversion, annotation, analysis ...

Perl

treemmer-animate

detectEVE

Find endogenous viral elements in genomes

Python

cross-species-scaffolding

Super-scaffolding of draft genome assemblies with in silico mate-pair libraries derived from (closely) related references

Shell

ggworldmap

Visualize Global-Scale Quantitative Data on World Maps with Projection and Shifted Central Meridian

thacklr

A Collection of R Functions and Snippets I Often Use

host-phage-tRNA-att-finder

Link phages and potential host by finding shared attachment sites for prophage integration

Perl

pro-tycheposons

Supplementary code and data for mobile genetic elements in Prochlorococcus

kmer-scripts

scripts for working with kmers - plots, filter, ...

thackl.github.io

Source code of my homepage & blog

HTML

lecture-variant-calling

Variant-Calling-Example

proovframe-benchmark

Benchmark data sets used to assess proovframe - frame-shift correction for long-read (meta)genomics

Shell

plot-scripts

Quick plots directly in the terminal window

google-sync

Scripts for syncing local tsv files with google spreadsheets

dropbox-dual-account-setup

Multiple dropbox accounts on linux

Shell

simons-metagenome-data-descriptor-map-figure

Jupyter Notebook

thackl/proovframe

thackl

Reviews

Repository Details

More Repositories