Discover tandermann/iucn_extinction_simulator Open Source project

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Python
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MIT License
Created about 5 years ago
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tandermann

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A program for estimating extinction probability and date for a given set of species, based on IUCN threat assessments

iucnsim

iucnsim R-package

snp_extraction_from_alignments

This repository contains tools for the extraction of Single Nucleotide Polymorphisms (SNPs) from multiple sequence alignments.

Python

paleovegetation

Code and data related to the reconstruction of paleovegetation using BNNs

Python

pop_gen_workshop_2017

This is a collection of exercises, scripts and notes from the workshop on demographic inference, 2017, Tjärnö, Sweden (with Daniel Wegmann and Matteo Fumagalli))

Jupyter Notebook

python_for_biologists

Here you can find all tutorials and materials for the GGBC python for biologists course

HTML

spatial_R_course

Here you can find all tutorials and materials for the GGBC spatial R workshop

HTML

UCE-data-management

This repository containes a detailed description (see Wiki) of the process of extracting UCE-contigs from your Illumina read data and how to label and align them and eventually how to analysze this dataset phylogenetically with MPEST and MrBayes

Python

workshops

online material for various workshops

HTML

bayesian_course_2017

Contents and scripts of the ForBio course 'Bayes in Practice' taught by Daniele Silvestro

Jupyter Notebook

NN_diversity_prediction

HTML

Processing-Illumina-reads

Shell

ai_workshop

Data, tutorial, and lecture slides for building custom neural network models

HTML

runForest

A command line interface program to apply the RandomForest machine learning model for feature selection and classification of unknown data points

Python

feature_gen_paleoveg

Experimental code to produce meaningful space-time distance features, using NNs

Python

assembling-complete-mt-genome

This repository contains tools for an automated assembly of the complete mitochondrial DNA from Illumina NGS data

Shell

topaza_uce

all files and commands related to the topaza UCE allele phasing project

tandermann/iucn_extinction_simulator

tandermann

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