tandermann/assembling-complete-mt-genome tandermann/assembling-complete-mt-genome

  • Stars
    star
    1
  • Language
    Shell
  • Created over 9 years ago
  • Updated about 8 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
tandermann/assembling-complete-mt-genome
github

tandermann

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

This repository contains tools for an automated assembly of the complete mitochondrial DNA from Illumina NGS data

More Repositories

1

iucn_extinction_simulator

A program for estimating extinction probability and date for a given set of species, based on IUCN threat assessments
Python
15
star
2

iucnsim

iucnsim R-package
R
7
star
3

snp_extraction_from_alignments

This repository contains tools for the extraction of Single Nucleotide Polymorphisms (SNPs) from multiple sequence alignments.
Python
6
star
4

paleovegetation

Code and data related to the reconstruction of paleovegetation using BNNs
Python
5
star
5

pop_gen_workshop_2017

This is a collection of exercises, scripts and notes from the workshop on demographic inference, 2017, TjΓ€rnΓΆ, Sweden (with Daniel Wegmann and Matteo Fumagalli))
Jupyter Notebook
5
star
6

python_for_biologists

Here you can find all tutorials and materials for the GGBC python for biologists course
HTML
4
star
7

spatial_R_course

Here you can find all tutorials and materials for the GGBC spatial R workshop
HTML
4
star
8

UCE-data-management

This repository containes a detailed description (see Wiki) of the process of extracting UCE-contigs from your Illumina read data and how to label and align them and eventually how to analysze this dataset phylogenetically with MPEST and MrBayes
Python
4
star
9

workshops

online material for various workshops
HTML
3
star
10

bayesian_course_2017

Contents and scripts of the ForBio course 'Bayes in Practice' taught by Daniele Silvestro
Jupyter Notebook
2
star
11

NN_diversity_prediction

HTML
2
star
12

Processing-Illumina-reads

Shell
2
star
13

ai_workshop

Data, tutorial, and lecture slides for building custom neural network models
HTML
1
star
14

runForest

A command line interface program to apply the RandomForest machine learning model for feature selection and classification of unknown data points
Python
1
star
15

feature_gen_paleoveg

Experimental code to produce meaningful space-time distance features, using NNs
Python
1
star
16

topaza_uce

all files and commands related to the topaza UCE allele phasing project
1
star