• Stars
    star
    1
  • Language
    Python
  • License
    MIT License
  • Created almost 2 years ago
  • Updated almost 2 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Workflow for screening massive amounts of small molecules (ligands) against a target (PDB-File)

More Repositories

1

rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2
Python
318
star
2

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow
Python
238
star
3

docs

Documentation of the Snakemake-Workflows project
151
star
4

single-cell-rna-seq

A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
R
97
star
5

snakemake-workflow-template

A template for standard compliant snakemake-workflows
Python
85
star
6

dna-seq-varlociraptor

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
Python
82
star
7

rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
Python
64
star
8

cookiecutter-snakemake-workflow

A cookiecutter template for Snakemake workflows
Python
56
star
9

chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq).
Python
26
star
10

ngs-test-data

A workflow for creating small NGS test data sets, useful for continuous integration.
Python
21
star
11

dna-seq-neoantigen-prediction

Snakemake workflow for neoantigen prediction
Python
14
star
12

dna-seq-benchmark

A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets
Python
11
star
13

dna-seq-mtb

A flavor of https://github.com/snakemake-workflows/dna-seq-varlociraptor preconfigured for molecular tumor boards
Python
4
star
14

cyrcular-calling

A Snakemake workflow for ecDNA detection in Nanopore or Illumina sequencing reads derived from DNA samples enriched for circular DNA.
Python
3
star
15

species-quantification

Python
2
star
16

cite-seq-alevin-fry-seurat

Snakemake workflow for CITE-seq analaysis with alevin-fry and seurat
R
2
star
17

transcriptome-differential-expression

long read differential expression analysis
Python
1
star
18

rad-seq-stacks

Python
1
star