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genome_updater
Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancyganon
ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and moremultitax
Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)metameta
grimer
GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection.dudes
DUDes: a top-down taxonomic profiler for metagenomics and metaproteomicstaxsbp
TaxSBP - Taxonomic structured bin packing implementationmetabench
MetaBench is a pipeline to run and benchmark metagenomics tools. It covers database construction, taxonomic binning and profiling.fgap
an automated gap closing toolganon_benchmark
benchmarking scripts for ganonpylca
Lowest common ancestor (LCA) algorithm implementation in PythonLove Open Source and this site? Check out how you can help us