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genome_updater
Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancymultitax
Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)metameta
grimer
GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection.dudes
DUDes: a top-down taxonomic profiler for metagenomics and metaproteomicstaxsbp
TaxSBP - Taxonomic structured bin packing implementationmetabench
MetaBench is a pipeline to run and benchmark metagenomics tools. It covers database construction, taxonomic binning and profiling.fgap
an automated gap closing toolganon_benchmark
benchmarking scripts for ganonmetametamerge
pylca
Lowest common ancestor (LCA) algorithm implementation in PythonLove Open Source and this site? Check out how you can help us