pirovc/fgap

Stars
3
Rank 3,963,521 (Top 79 %)
Language
MATLAB
License
MIT License
Created about 7 years ago
Updated almost 7 years ago

pirovc/fgap

pirovc

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an automated gap closing tool

genome_updater

Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

ganon

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more

multitax

Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)

metameta

grimer

GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection.

dudes

DUDes: a top-down taxonomic profiler for metagenomics and metaproteomics

taxsbp

TaxSBP - Taxonomic structured bin packing implementation

metabench

MetaBench is a pipeline to run and benchmark metagenomics tools. It covers database construction, taxonomic binning and profiling.

ganon_benchmark

benchmarking scripts for ganon

metametamerge

pylca

Lowest common ancestor (LCA) algorithm implementation in Python