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SVanalyzer
Tools for the analysis of structural variation in genomesShimmer
Shimmer is a software package for the characterization of genetic differences between two very similar samples, e.g., a tumor sample and its matched normal tissue sample.bam2mpg
Software for calling variants from next-generation sequence data.MMBVariantCalling
Scripts and updates for running the variant pipeline described in "Variant Calling From Next Generation Sequence Data" by Nancy F. Hansenq100bench
Software for comparing genome assemblies and read datasets to a benchmark genome like the Q100 project's HG002v1.0.1mlgenofeatures
mlgenotype
Python package for training and using machine learning models to recognize structural variants using features of aligned short read dataLove Open Source and this site? Check out how you can help us