nhansen/SVanalyzer

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Created over 7 years ago
Updated 8 months ago

nhansen/SVanalyzer

nhansen

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Tools for the analysis of structural variation in genomes

Shimmer

Shimmer is a software package for the characterization of genetic differences between two very similar samples, e.g., a tumor sample and its matched normal tissue sample.

bam2mpg

Software for calling variants from next-generation sequence data.

q100bench

Software for comparing genome assemblies and read datasets to a benchmark genome like the Q100 project's HG002v1.0.1

MMBVariantCalling

Scripts and updates for running the variant pipeline described in "Variant Calling From Next Generation Sequence Data" by Nancy F. Hansen

mlgenofeatures

BardCNV

BardCNV calls copy number variants from next generation sequencing data.

mlgenotype

Python package for training and using machine learning models to recognize structural variants using features of aligned short read data