Discover @nhansen Open Source projects

Nancy F. Hansen (@nhansen)

nhansen

Stars
103
Global Rank 202,496 (Top 7 %)
Followers 22
Following 6
Registered about 12 years ago
Most used languages

Perl
50.0 %

Python
37.5 %

C
12.5 %
Location 🇺🇸 United States
Country Total Rank 45,224
Country Ranking

Perl
205

SVanalyzer

Tools for the analysis of structural variation in genomes

Shimmer

Shimmer is a software package for the characterization of genetic differences between two very similar samples, e.g., a tumor sample and its matched normal tissue sample.

bam2mpg

Software for calling variants from next-generation sequence data.

MMBVariantCalling

Scripts and updates for running the variant pipeline described in "Variant Calling From Next Generation Sequence Data" by Nancy F. Hansen

q100bench

Software for comparing genome assemblies and read datasets to a benchmark genome like the Q100 project's HG002v1.0.1

mlgenofeatures

BardCNV

BardCNV calls copy number variants from next generation sequencing data.

mlgenotype

Python package for training and using machine learning models to recognize structural variants using features of aligned short read data