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gmseg
Spinal cord gray matter segmentation using deep dilated convolutions.deep-active-learning
Implementation of active learning features for AxonDeepSeg software (axon-myelin segmentation)axonseg
Segment axon and myelin from microscopy data. Written in Matlab.multiclass-segmentation
Repository for the code related to the NIH marmoset longitudinal segmentation project.gifmaker
Convert images to GIF animation.vertebral-labeling-deep-learning
Deep Learning method for intervertebral disc detection and labeling (WIP)totalspineseg
Robust Instance Segmentation of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterative Algorithm.axonpacking
template
A framework for creating unbiased MRI templates of the spinal cordmp2rage
Function which computes T1 from mp2raget2star-mapping
Collection of scripts to fit T2* MRI dataSusceptibility-Separation-Phantom
This project aims to create and simulate a realistic phantom for susceptibility separation algorithm validation.lesion-mapping
Set of tools for mapping lesions in the brain and/or spinal cordqDLab
Quantitative Diffusion MRI Made Easy with qDLab: a Software for Data Simulation, Analysis and VisualizationqMTLab
surface_based_tools
Tools related to Freesurfer pipelineintranet.neuro.polymtl.ca
NeuroPoly's lab manualdata-management
Repo that deals with datalad aspects for internal useagilent_7t
Various matlab code to manage data from Agilent 7T scanner at MHIneuro.polymtl.ca
NeuroPoly's Websiteslicer-manual-annotation
phantom-spinoza
CAD model and recipe for MRI head-torso phantom fabricationbibeasy
Set of tools to manage academic bibliographysimulation-fourier-reconstruction
Code to investigate what might cause the different Fourier-related artifacts that we encounter during our experiments.coil_simulation_web
web version of program for simulating RF coil array for MRIparadim-segmentation-brain
Repository for implementing pre-existing brain segmentation models trained with deep learning in PARADIMidea-projects
Ideas for cool projectsbids_neuropoly
Python package that deals with BIDS structure for filtering data (specific to NeuroPoly developments)docker
Collection of dockerfilespartial_volume_correction
This repository moved to the following address:distriploy
Release & deployment helperatlas-rat
Scripts to generate a microstructure atlas of the rat spinal cordchangelog
Create a changelog file from all the merged pull requestspediatric-DL-registration
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