• This repository has been archived on 26/Nov/2021
  • Stars
    star
    1
  • Language
    Python
  • Created almost 6 years ago
  • Updated over 4 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Python package that deals with BIDS structure for filtering data (specific to NeuroPoly developments)

More Repositories

1

gmseg

Spinal cord gray matter segmentation using deep dilated convolutions.
Jupyter Notebook
45
star
2

domainadaptation

Repository for the article "Unsupervised domain adaptation for medical imaging segmentation with self-ensembling".
Python
43
star
3

deep-active-learning

Implementation of active learning features for AxonDeepSeg software (axon-myelin segmentation)
Jupyter Notebook
38
star
4

axonseg

Segment axon and myelin from microscopy data. Written in Matlab.
MATLAB
18
star
5

multiclass-segmentation

Repository for the code related to the NIH marmoset longitudinal segmentation project.
Python
17
star
6

gifmaker

Convert images to GIF animation.
Python
16
star
7

vertebral-labeling-deep-learning

Deep Learning method for intervertebral disc detection and labeling (WIP)
Python
14
star
8

totalspineseg

Robust Instance Segmentation of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterative Algorithm.
Python
13
star
9

axonpacking

MATLAB
8
star
10

template

A framework for creating unbiased MRI templates of the spinal cord
Python
5
star
11

mp2rage

Function which computes T1 from mp2rage
Python
5
star
12

t2star-mapping

Collection of scripts to fit T2* MRI data
MATLAB
5
star
13

Susceptibility-Separation-Phantom

This project aims to create and simulate a realistic phantom for susceptibility separation algorithm validation.
MATLAB
5
star
14

lesion-mapping

Set of tools for mapping lesions in the brain and/or spinal cord
Python
4
star
15

qDLab

Quantitative Diffusion MRI Made Easy with qDLab: a Software for Data Simulation, Analysis and Visualization
MATLAB
4
star
16

qMTLab

4
star
17

surface_based_tools

Tools related to Freesurfer pipeline
MATLAB
4
star
18

intranet.neuro.polymtl.ca

NeuroPoly's lab manual
HTML
4
star
19

data-management

Repo that deals with datalad aspects for internal use
Python
4
star
20

agilent_7t

Various matlab code to manage data from Agilent 7T scanner at MHI
MATLAB
3
star
21

neuro.polymtl.ca

NeuroPoly's Website
Python
3
star
22

slicer-manual-annotation

Python
3
star
23

phantom-spinoza

CAD model and recipe for MRI head-torso phantom fabrication
2
star
24

bibeasy

Set of tools to manage academic bibliography
Python
2
star
25

simulation-fourier-reconstruction

Code to investigate what might cause the different Fourier-related artifacts that we encounter during our experiments.
Jupyter Notebook
2
star
26

coil_simulation_web

web version of program for simulating RF coil array for MRI
Python
2
star
27

paradim-segmentation-brain

Repository for implementing pre-existing brain segmentation models trained with deep learning in PARADIM
Python
2
star
28

idea-projects

Ideas for cool projects
1
star
29

docker

Collection of dockerfiles
Shell
1
star
30

partial_volume_correction

This repository moved to the following address:
1
star
31

distriploy

Release & deployment helper
Python
1
star
32

atlas-rat

Scripts to generate a microstructure atlas of the rat spinal cord
MATLAB
1
star
33

changelog

Create a changelog file from all the merged pull requests
Python
1
star
34

pediatric-DL-registration

HTML
1
star