neuropoly/template

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Language
Python
License
MIT License
Created over 7 years ago
Updated about 1 month ago

neuropoly/template

neuropoly

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A framework for creating unbiased MRI templates of the spinal cord

gmseg

Spinal cord gray matter segmentation using deep dilated convolutions.

Jupyter Notebook

domainadaptation

Repository for the article "Unsupervised domain adaptation for medical imaging segmentation with self-ensembling".

deep-active-learning

Implementation of active learning features for AxonDeepSeg software (axon-myelin segmentation)

Jupyter Notebook

axonseg

Segment axon and myelin from microscopy data. Written in Matlab.

multiclass-segmentation

Repository for the code related to the NIH marmoset longitudinal segmentation project.

gifmaker

Convert images to GIF animation.

vertebral-labeling-deep-learning

Deep Learning method for intervertebral disc detection and labeling (WIP)

totalspineseg

Robust Instance Segmentation of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterative Algorithm.

axonpacking

mp2rage

Function which computes T1 from mp2rage

t2star-mapping

Collection of scripts to fit T2* MRI data

Susceptibility-Separation-Phantom

This project aims to create and simulate a realistic phantom for susceptibility separation algorithm validation.

lesion-mapping

Set of tools for mapping lesions in the brain and/or spinal cord

qDLab

Quantitative Diffusion MRI Made Easy with qDLab: a Software for Data Simulation, Analysis and Visualization

qMTLab

surface_based_tools

Tools related to Freesurfer pipeline

intranet.neuro.polymtl.ca

NeuroPoly's lab manual

data-management

Repo that deals with datalad aspects for internal use

agilent_7t

Various matlab code to manage data from Agilent 7T scanner at MHI

neuro.polymtl.ca

NeuroPoly's Website

slicer-manual-annotation

phantom-spinoza

CAD model and recipe for MRI head-torso phantom fabrication

bibeasy

Set of tools to manage academic bibliography

simulation-fourier-reconstruction

Code to investigate what might cause the different Fourier-related artifacts that we encounter during our experiments.

Jupyter Notebook

coil_simulation_web

web version of program for simulating RF coil array for MRI

paradim-segmentation-brain

Repository for implementing pre-existing brain segmentation models trained with deep learning in PARADIM

idea-projects

Ideas for cool projects

bids_neuropoly

Python package that deals with BIDS structure for filtering data (specific to NeuroPoly developments)

docker

Collection of dockerfiles

partial_volume_correction

This repository moved to the following address:

distriploy

Release & deployment helper

atlas-rat

Scripts to generate a microstructure atlas of the rat spinal cord

changelog

Create a changelog file from all the merged pull requests

pediatric-DL-registration