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libsequence
libsequence: a C++ class library for evolutionary genetic analysisBigDataFormats
Tutorial on programming or "big data"/bioinformaticsfwdpy11
Forward-time simulation in Python using fwdppfwdpp
fwdpp is a C++ template library for implementing efficient forward-time population genetic simulationsgimp_scripts
Plugins for GIMPfwdpy
forward-time population genetic simulation in pythondevnotes
Notes/tips/tricks/obscure hints related to software development.msstats
msstats calculates many common popgen summary statistics from the output of the coalescent simulation "ms".pylibseq
Python interface to libsequence via pybind11md2Canvas
Examples of canvas questions written in MarkdownRcode4teaching
R code that I use for teaching and illustration of population genetic concepts.fwdpy11_arg_example
Example of tracking the ARG during forward simulations. Implementation is a Python package using fwdpp, fwdpy11, msprime, and pybind11.cython_mcpp
Glue layer between Cython and C++11/14/17buRden
Rcpp functions for performing "burden" tests.analysis
Programs for the (pre-NGS-era) analysis of population-genetic data.ABCreg
Automating approximate Bayesian computation by local linear regressionsweepsims
A collection of coalescent simulations of selective sweeps written over the years. (See wiki for citation info, please.)newgene
The simulation code used in doi:10.1534/genetics.107.074948landscape
Explicit landscape simulations using fwdpptext2qti_example
text2qti_examplesequtils
Tools for manipulation of (pre-NGS-era) sequence data. (Probably only for old folks at this point in time...)travis_test
How to get a travis yml file to do what I want.Love Open Source and this site? Check out how you can help us