molpopgen/pylibseq molpopgen/pylibseq

  • This repository has been archived on 12/Oct/2023
  • Stars
    star
    8
  • Rank 2,099,232 (Top 42 %)
  • Language
    C++
  • License
    GNU General Publi...
  • Created about 9 years ago
  • Updated over 5 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
molpopgen/pylibseq
github

molpopgen

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Python interface to libsequence via pybind11

More Repositories

1

libsequence

libsequence: a C++ class library for evolutionary genetic analysis
C++
51
star
2

BigDataFormats

Tutorial on programming or "big data"/bioinformatics
33
star
3

fwdpy11

Forward-time simulation in Python using fwdpp
C++
30
star
4

fwdpp

fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations
C++
27
star
5

gimp_scripts

Plugins for GIMP
Python
23
star
6

fwdpy

forward-time population genetic simulation in python
Python
18
star
7

devnotes

Notes/tips/tricks/obscure hints related to software development.
C++
11
star
8

msstats

msstats calculates many common popgen summary statistics from the output of the coalescent simulation "ms".
TeX
9
star
9

pecnv

C++ tools for calling structural variants from PE mapping of short reads.
C++
8
star
10

md2Canvas

Examples of canvas questions written in Markdown
Makefile
5
star
11

Rcode4teaching

R code that I use for teaching and illustration of population genetic concepts.
R
4
star
12

fwdpy11_arg_example

Example of tracking the ARG during forward simulations. Implementation is a Python package using fwdpp, fwdpy11, msprime, and pybind11.
Python
4
star
13

cython_mcpp

Glue layer between Cython and C++11/14/17
Python
3
star
14

buRden

Rcpp functions for performing "burden" tests.
C++
3
star
15

analysis

Programs for the (pre-NGS-era) analysis of population-genetic data.
TeX
3
star
16

ABCreg

Automating approximate Bayesian computation by local linear regression
TeX
2
star
17

sweepsims

A collection of coalescent simulations of selective sweeps written over the years. (See wiki for citation info, please.)
C++
2
star
18

newgene

The simulation code used in doi:10.1534/genetics.107.074948
C++
1
star
19

landscape

Explicit landscape simulations using fwdpp
C++
1
star
20

text2qti_example

text2qti_example
Python
1
star
21

sequtils

Tools for manipulation of (pre-NGS-era) sequence data. (Probably only for old folks at this point in time...)
Shell
1
star
22

travis_test

How to get a travis yml file to do what I want.
Shell
1
star