molpopgen/gimp_scripts molpopgen/gimp_scripts

  • Stars
    star
    23
  • Rank 1,016,462 (Top 21 %)
  • Language
    Python
  • License
    GNU General Publi...
  • Created over 6 years ago
  • Updated almost 5 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
molpopgen/gimp_scripts
github

molpopgen

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Plugins for GIMP

More Repositories

1

libsequence

libsequence: a C++ class library for evolutionary genetic analysis
C++
51
star
2

BigDataFormats

Tutorial on programming or "big data"/bioinformatics
33
star
3

fwdpy11

Forward-time simulation in Python using fwdpp
C++
30
star
4

fwdpp

fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations
C++
27
star
5

fwdpy

forward-time population genetic simulation in python
Python
18
star
6

devnotes

Notes/tips/tricks/obscure hints related to software development.
C++
11
star
7

msstats

msstats calculates many common popgen summary statistics from the output of the coalescent simulation "ms".
TeX
9
star
8

pylibseq

Python interface to libsequence via pybind11
C++
8
star
9

pecnv

C++ tools for calling structural variants from PE mapping of short reads.
C++
8
star
10

md2Canvas

Examples of canvas questions written in Markdown
Makefile
5
star
11

Rcode4teaching

R code that I use for teaching and illustration of population genetic concepts.
R
4
star
12

fwdpy11_arg_example

Example of tracking the ARG during forward simulations. Implementation is a Python package using fwdpp, fwdpy11, msprime, and pybind11.
Python
4
star
13

cython_mcpp

Glue layer between Cython and C++11/14/17
Python
3
star
14

buRden

Rcpp functions for performing "burden" tests.
C++
3
star
15

analysis

Programs for the (pre-NGS-era) analysis of population-genetic data.
TeX
3
star
16

ABCreg

Automating approximate Bayesian computation by local linear regression
TeX
2
star
17

sweepsims

A collection of coalescent simulations of selective sweeps written over the years. (See wiki for citation info, please.)
C++
2
star
18

newgene

The simulation code used in doi:10.1534/genetics.107.074948
C++
1
star
19

landscape

Explicit landscape simulations using fwdpp
C++
1
star
20

text2qti_example

text2qti_example
Python
1
star
21

sequtils

Tools for manipulation of (pre-NGS-era) sequence data. (Probably only for old folks at this point in time...)
Shell
1
star
22

travis_test

How to get a travis yml file to do what I want.
Shell
1
star