Kevin R. Thornton (@molpopgen)
github

molpopgen

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  • Stars
    star
    245
  • Global Rank 101,558 (Top 4 %)
  • Followers 115
  • Following 6
  • Registered over 10 years ago
  • Most used languages
    C++
         45.5 %
    Python
         22.7 %
    TeX
         13.6 %
    Shell
         9.1 %
    Makefile     4.5 %
    R
         4.5 %
  • Location πŸ‡ΊπŸ‡Έ United States
  • Country Total Rank 25,060
  • Country Ranking
    TeX
         976
    Makefile     1,214
    C++
         1,939
    R
         4,535

Top repositories

1

libsequence

libsequence: a C++ class library for evolutionary genetic analysis
C++
50
star
2

BigDataFormats

Tutorial on programming or "big data"/bioinformatics
33
star
3

fwdpy11

Forward-time simulation in Python using fwdpp
C++
27
star
4

fwdpp

fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations
C++
27
star
5

gimp_scripts

Plugins for GIMP
Python
22
star
6

fwdpy

forward-time population genetic simulation in python
Python
18
star
7

devnotes

Notes/tips/tricks/obscure hints related to software development.
C++
11
star
8

msstats

msstats calculates many common popgen summary statistics from the output of the coalescent simulation "ms".
TeX
9
star
9

pylibseq

Python interface to libsequence via pybind11
C++
8
star
10

pecnv

C++ tools for calling structural variants from PE mapping of short reads.
C++
8
star
11

md2Canvas

Examples of canvas questions written in Markdown
Makefile
5
star
12

Rcode4teaching

R code that I use for teaching and illustration of population genetic concepts.
R
4
star
13

fwdpy11_arg_example

Example of tracking the ARG during forward simulations. Implementation is a Python package using fwdpp, fwdpy11, msprime, and pybind11.
Python
4
star
14

cython_mcpp

Glue layer between Cython and C++11/14/17
Python
3
star
15

buRden

Rcpp functions for performing "burden" tests.
C++
3
star
16

ABCreg

Automating approximate Bayesian computation by local linear regression
TeX
2
star
17

sweepsims

A collection of coalescent simulations of selective sweeps written over the years. (See wiki for citation info, please.)
C++
2
star
18

analysis

Programs for the (pre-NGS-era) analysis of population-genetic data.
TeX
2
star
19

newgene

The simulation code used in doi:10.1534/genetics.107.074948
C++
1
star
20

landscape

Explicit landscape simulations using fwdpp
C++
1
star
21

text2qti_example

text2qti_example
Python
1
star
22

sequtils

Tools for manipulation of (pre-NGS-era) sequence data. (Probably only for old folks at this point in time...)
Shell
1
star
23

travis_test

How to get a travis yml file to do what I want.
Shell
1
star