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GenomicSQLite
Genomics Extension for SQLitesqlite_zstd_vfs
SQLite3 extension for read/write storage compression with ZstandardPhyloCSF
Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regionsspVCF
Sparse Project VCF: evolution of VCF to encode population genotype matrices efficientlysqlite_web_vfs
SQLite3 extension for read-only HTTP(S) database accessiitii
Implicit Interval Tree with Interpolation Indexforkwork
OCaml library for forking child processes to perform work on multiple coresshould.ml
Literate assertions for OCamltwt
The Whitespace Thing for OCamlnode-assert-type
Concise runtime type assertions for Node.jsgvcf_norm
gVCF allele normalizerocaml-sqlite3EZ
Thin wrapper for sqlite3-ocaml with a simplified interfaceblogging-my-genome
DNAnexus platform applets for analyzing my genome, and associated notesCRF
OCaml library for semi-Markov conditional random fieldsvcf_line_splitter
Split a huge VCF file into parts, quicklyminiwdl-cloud
SUPERSEDED BY https://github.com/miniwdl-ext/miniwdl-awsocaml-bgzf
OCaml library for BGZF, a gunzip-compatible format allowing random access to the uncompressed datac9-ocaml
Installation script for OCaml and OPAM inside a Cloud9 IDE workspacemlin-ocaml-genomics
Mike Lin's OCaml Genomics librarystakesign
Sign files via blockchain + put your money where your mouth isRocksWorm
Access RocksDB databases over HTTPS for write-once/read-many use casesyaxpo
Yet Another XML Parser for OCamlyajl-ocaml
OCaml bindings for the YAJL streaming JSON parserdxMAF
DNAnexus platform apps for working with MAF cross-species genome alignmentspfda2dockstore
Export precisionFDA apps to Dockstore20140411-dxjc-wgs-variant-calling
Presentation for DNAnexus journal club on Heng Li's WGS variant calling preprintounit
Unit tests for OCaml (mirror of darcs repository)GenomicSQLite-examples
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