mlin/stakesign

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2
Language
Python
License
MIT License
Created almost 4 years ago
Updated almost 4 years ago

mlin/stakesign

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GenomicSQLite

Genomics Extension for SQLite

sqlite_zstd_vfs

SQLite3 extension for read/write storage compression with Zstandard

PhyloCSF

Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions

spVCF

Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently

sqlite_web_vfs

SQLite3 extension for read-only HTTP(S) database access

gfabase

GFA insert into GenomicSQLite

Jupyter Notebook

iitii

Implicit Interval Tree with Interpolation Index

Jupyter Notebook

forkwork

OCaml library for forking child processes to perform work on multiple cores

should.ml

Literate assertions for OCaml

twt

The Whitespace Thing for OCaml

node-assert-type

Concise runtime type assertions for Node.js

gvcf_norm

gVCF allele normalizer

ocaml-sqlite3EZ

Thin wrapper for sqlite3-ocaml with a simplified interface

blogging-my-genome

DNAnexus platform applets for analyzing my genome, and associated notes

CRF

OCaml library for semi-Markov conditional random fields

vcf_line_splitter

Split a huge VCF file into parts, quickly

miniwdl-cloud

SUPERSEDED BY https://github.com/miniwdl-ext/miniwdl-aws

ocaml-bgzf

OCaml library for BGZF, a gunzip-compatible format allowing random access to the uncompressed data

c9-ocaml

Installation script for OCaml and OPAM inside a Cloud9 IDE workspace

mlin-ocaml-genomics

Mike Lin's OCaml Genomics library

RocksWorm

Access RocksDB databases over HTTPS for write-once/read-many use cases

yaxpo

Yet Another XML Parser for OCaml

yajl-ocaml

OCaml bindings for the YAJL streaming JSON parser

dxMAF

DNAnexus platform apps for working with MAF cross-species genome alignments

pfda2dockstore

Export precisionFDA apps to Dockstore

20140411-dxjc-wgs-variant-calling

Presentation for DNAnexus journal club on Heng Li's WGS variant calling preprint

ounit

Unit tests for OCaml (mirror of darcs repository)

GenomicSQLite-examples