mlin/GenomicSQLite-examples mlin/GenomicSQLite-examples

  • Stars
    star
    1
  • Language
    C
  • License
    MIT License
  • Created over 3 years ago
  • Updated over 3 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
mlin/GenomicSQLite-examples
github

mlin

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

More Repositories

1

GenomicSQLite

Genomics Extension for SQLite
C++
141
star
2

sqlite_zstd_vfs

SQLite3 extension for read/write storage compression with Zstandard
C++
122
star
3

PhyloCSF

Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions
OCaml
63
star
4

spVCF

Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently
C++
54
star
5

sqlite_web_vfs

SQLite3 extension for read-only HTTP(S) database access
C++
46
star
6

gfabase

GFA insert into GenomicSQLite
Jupyter Notebook
43
star
7

iitii

Implicit Interval Tree with Interpolation Index
Jupyter Notebook
41
star
8

forkwork

OCaml library for forking child processes to perform work on multiple cores
OCaml
19
star
9

should.ml

Literate assertions for OCaml
OCaml
18
star
10

twt

The Whitespace Thing for OCaml
OCaml
10
star
11

node-assert-type

Concise runtime type assertions for Node.js
CoffeeScript
8
star
12

gvcf_norm

gVCF allele normalizer
Rust
8
star
13

ocaml-sqlite3EZ

Thin wrapper for sqlite3-ocaml with a simplified interface
OCaml
8
star
14

blogging-my-genome

DNAnexus platform applets for analyzing my genome, and associated notes
OCaml
7
star
15

CRF

OCaml library for semi-Markov conditional random fields
OCaml
5
star
16

vcf_line_splitter

Split a huge VCF file into parts, quickly
C++
5
star
17

miniwdl-cloud

SUPERSEDED BY https://github.com/miniwdl-ext/miniwdl-aws
HCL
4
star
18

ocaml-bgzf

OCaml library for BGZF, a gunzip-compatible format allowing random access to the uncompressed data
C
3
star
19

c9-ocaml

Installation script for OCaml and OPAM inside a Cloud9 IDE workspace
Shell
3
star
20

mlin-ocaml-genomics

Mike Lin's OCaml Genomics library
OCaml
2
star
21

stakesign

Sign files via blockchain + put your money where your mouth is
Python
2
star
22

RocksWorm

Access RocksDB databases over HTTPS for write-once/read-many use cases
C++
2
star
23

yaxpo

Yet Another XML Parser for OCaml
OCaml
2
star
24

yajl-ocaml

OCaml bindings for the YAJL streaming JSON parser
OCaml
2
star
25

dxMAF

DNAnexus platform apps for working with MAF cross-species genome alignments
OCaml
1
star
26

pfda2dockstore

Export precisionFDA apps to Dockstore
Python
1
star
27

20140411-dxjc-wgs-variant-calling

Presentation for DNAnexus journal club on Heng Li's WGS variant calling preprint
1
star
28

ounit

Unit tests for OCaml (mirror of darcs repository)
OCaml
1
star