ljdursi/consensus_call_docker ljdursi/consensus_call_docker

  • Stars
    star
    2
  • Language
    Shell
  • Created almost 8 years ago
  • Updated over 7 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
ljdursi/consensus_call_docker
github

ljdursi

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Make PCAWG consensus calls given input VCFs

More Repositories

1

mpi-tutorial

1.5 day MPI tutorial for those with some C/Fortran knowledge.
C
89
star
2

beyond-single-core-R

Short tour of parallel and foreach packages, and how to think about scaling data analyses
R
75
star
3

poapy

A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes
Python
71
star
4

coarray-examples

Simple coarray examples for teaching
Fortran
39
star
5

ML-for-scientists

Machine Learning for Scientists Tutorial
Python
35
star
6

parallel-IO-tutorial

Half-day Parallel I/O tutorial for HPC - MPI-IO, HDF5, NetCDF
C
32
star
7

hadoop-for-hpcers-tutorial

Introduction to Hadoop for those from an HPC simulation background
JavaScript
31
star
8

mergevcf

Python package and routines for merging VCF files
Python
29
star
9

Spark-Chapel-TF-UMich-2016

Slides and materials for workshop at University of Michigan MICDE
JavaScript
19
star
10

EuroMPI2016

Presentation for EuroMPI 2016
Shell
12
star
11

julia_v_chapel

Simple test cases comparing julia and chapel
Chapel
7
star
12

glbio-jupyter-workshop

Instructions and files for #GLBIOCCBC16 Workshop 2, "Jupyter Notebooks for Performing and Sharing Bioinformatics Analyses"
Jupyter Notebook
6
star
13

rosalind_chapel

Rosalind exercises in chapel
Chapel
4
star
14

make-for-reproducible-data-analysis

Shell
4
star
15

CHIUW2017

Keynote talk for CHIUW2017
Shell
4
star
16

simple-squiggle-pseudomapper

Simple demonstration of using spatial indexes (here kd-trees) to approximately map nanopore squiggle reads
Python
4
star
17

make_pattern_rules

Tutorial for using Makefile pattern rules
Makefile
3
star
18

dask-sparse-mtx

A simple demonstration of using dask tasks to multiple sparse matrices stored in a file
Python
2
star
19

shell-for-scientists

An introduction to the command line and automation for researchers
C
2
star
20

scalable-analysis-R

A day-long tutorial on scalable data analysis in R
R
2
star
21

validation-pipeline

R
1
star
22

new-newsletter-page

Website for the research computing teams newsletter
HTML
1
star
23

intro-profiling-tools

Quick Introduction to some HPC profiling tools
C
1
star
24

opa_open_registered_controlled_ex

Python
1
star
25

mon_py_wrkshp

Jupyter Notebook
1
star
26

IACS-SBU-2018

"HPC, Big Data, and Large Scale Genomics"
1
star
27

simple-synthetic-somatic

Very simple synthetic somatic read/call generator for testing mechanics of pipelines
Python
1
star
28

sga-annotate-docker

Docker file for sga annotation pipeline
Python
1
star
29

dursi-blog

Content for blog
HTML
1
star
30

ga4gh_directory_singularity

First pass at a singularity version of the ga4gh server
Shell
1
star
31

keycloak_ldap_local

Demo of using Keycloak to provide OAuth2/OIDC authentication using LDAP as a source of identities
HTML
1
star