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kWIP
De novo estimates of genetic relatedness from next-gen sequencing dataaxe
Rapid competitive read demulitplexer. Made with tries.SRApy
SRA python toolshail
Hail: extract lines from a file, a la `head -n x | tail -n y`clogged
Tiny, configurable, pretty C logging libraryseqhax
Small sequence analysis tools that don't deserve their own repos.bioscripts
A Collection of Bioinformatic ScriptsAcanthophis
A comprehensive, opinionated plant variant calling pipeline in SnakemakeNVTK
Tools for managing natural variation collections2020_snakemake-workshop
Paneuc-acanthophis
Analysis of ~1000 eucalyputs genomes with the acanthophis pipelinepbshax
usc-demo
Demo of the userspace containers project at the Common Workflow Languagepandoc-notes
Take notes using vim, pandoc, xetex and vim-pandocboringLD
2020_hpa-geogenet
texlive-local
Dummy package to allow texlive to be installed locallyonlign
Online alignment prototypes for ANU improvements to AUGURFastaSanitiser
A python class/cli to sanitise fasta IDs to something sane, then back again. Lookin' at you, gisaid_sequences.fastaeuc-dp15-workspace
libqcpp
libqc++: C++11 library for next-gen sequence quality control and assessment.kdmRutil
venv.jl
Python-style virtual environments in Juliapanjournal
Pandoc templates meet journal latex templatesPaneucalyptShortReads
pyNGSQC
A pure-python next-gen sequencing quality control library, and soon to be command line toolkmer-distance-workshop
gbstrim
Trim GBS reads of adaptors and reduce over-inflation of allele counts.kdm-tor
My UNOFFICIAL dev branch of tor. See torproject.org for the real thingLove Open Source and this site? Check out how you can help us