Dr. K. D. Murray (@kdm9)
github

kdm9

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  • Stars
    star
    129
  • Global Rank 171,504 (Top 6 %)
  • Followers 139
  • Following 254
  • Registered over 12 years ago
  • Most used languages
    Python
         39.3 %
    C
         17.9 %
    R
         14.3 %
    Shell
         10.7 %
    C++
         7.1 %
    HTML
         3.6 %
    TeX
         3.6 %
    CSS
         3.6 %
  • Location πŸ‡¦πŸ‡Ί Australia
  • Country Total Rank 2,803
  • Country Ranking
    C
         291
    TeX
         294
    C++
         344
    R
         369
    CSS
         903
    Shell
         1,021
    Python
         1,227
    HTML
         2,324

Top repositories

1

kWIP

De novo estimates of genetic relatedness from next-gen sequencing data
C++
38
star
2

axe

Rapid competitive read demulitplexer. Made with tries.
C
21
star
3

SRApy

SRA python tools
Python
10
star
4

hail

Hail: extract lines from a file, a la `head -n x | tail -n y`
C
7
star
5

clogged

Tiny, configurable, pretty C logging library
C
6
star
6

seqhax

Small sequence analysis tools that don't deserve their own repos.
C
6
star
7

bioscripts

A Collection of Bioinformatic Scripts
Python
3
star
8

Acanthophis

A comprehensive, opinionated plant variant calling pipeline in Snakemake
Python
3
star
9

NVTK

Tools for managing natural variation collections
Python
3
star
10

2020_snakemake-workshop

Shell
3
star
11

Paneuc-acanthophis

Analysis of ~1000 eucalyputs genomes with the acanthophis pipeline
HTML
2
star
12

pbshax

Python
2
star
13

usc-demo

Demo of the userspace containers project at the Common Workflow Language
Python
2
star
14

pandoc-notes

Take notes using vim, pandoc, xetex and vim-pandoc
CSS
2
star
15

boringLD

R
1
star
16

2020_hpa-geogenet

R
1
star
17

texlive-local

Dummy package to allow texlive to be installed locally
1
star
18

onlign

Online alignment prototypes for ANU improvements to AUGUR
Python
1
star
19

FastaSanitiser

A python class/cli to sanitise fasta IDs to something sane, then back again. Lookin' at you, gisaid_sequences.fasta
Python
1
star
20

euc-dp15-workspace

R
1
star
21

libqcpp

libqc++: C++11 library for next-gen sequence quality control and assessment.
C++
1
star
22

kdmRutil

R
1
star
23

venv.jl

Python-style virtual environments in Julia
Shell
1
star
24

panjournal

Pandoc templates meet journal latex templates
TeX
1
star
25

PaneucalyptShortReads

Python
1
star
26

pyNGSQC

A pure-python next-gen sequencing quality control library, and soon to be command line tool
Python
1
star
27

kmer-distance-workshop

1
star
28

gbstrim

Trim GBS reads of adaptors and reduce over-inflation of allele counts.
Python
1
star
29

kdm-tor

My UNOFFICIAL dev branch of tor. See torproject.org for the real thing
C
1
star
30

raijin-ansible

Configure and install group-wide software modules on Raijin using ansible
Shell
1
star