kauralasoo/MTAT.03.239_Bioinformatics

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R
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Apache License 2.0
Created almost 7 years ago
Updated 7 months ago

kauralasoo/MTAT.03.239_Bioinformatics

kauralasoo

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Teaching materials and tutorials for the bioinformatics course thought at the University of Tartu

wiggleplotr

A small R package to make sequencing read coverage plots in R.

seqUtils

Semi-random collection of R functions to work with sequencing data.

macrophage-gxe-study

Shared genetic effects on chromatin and gene expression reveal widespread enhancer priming in immune response

eQTLUtils

Collection of reusable R functions for eQTL mapping

txrevise

Construct custom transcript annotations for Salmon

utils

Small scripts and wrapper around tools to deal with genomics data.

RNAseq_pipeline

Pipeline for downloading and processing published RNA-seq datasets

WordOCR

Toy example of optical character recognition implemented with OpenCV

WigglePlotR_old

A tool to create wiggle plots from RNA-Seq in R.

Blood_ATAC

Reanalysis of the ATAC-Seq data from the Corces et al. 2016 paper

ryanair-seat-allocation

How random are Ryanair's randomly allocated seats really?

pivotviewer.py

Tools to create PivotViewer collections in Python.

macrophage-tuQTLs

reviseAnnotations

R package to compare transcript annotations and split them into alternative transcription events.

flow_cytomtery_genetics

Analysis of macrophage cell surface expression of CD14, CD16 and CD206 proteins using flow cytometry.

colocWrapper

Helpful functions to streamline colocalisation analysis with coloc