Discover @kauralasoo Open Source projects

Kaur Alasoo (@kauralasoo)

kauralasoo

Stars
104
Global Rank 202,128 (Top 7 %)
Followers 40
Following 6
Registered almost 14 years ago
Most used languages

R
68.8 %

Python
12.5 %

Shell
12.5 %

C++
6.3 %
Location 🇪🇪 Estonia
Country Total Rank 258
Country Ranking

R
3

Shell
79

C++
93

Python
207

wiggleplotr

A small R package to make sequencing read coverage plots in R.

MTAT.03.239_Bioinformatics

Teaching materials and tutorials for the bioinformatics course thought at the University of Tartu

seqUtils

Semi-random collection of R functions to work with sequencing data.

macrophage-gxe-study

Shared genetic effects on chromatin and gene expression reveal widespread enhancer priming in immune response

eQTLUtils

Collection of reusable R functions for eQTL mapping

txrevise

Construct custom transcript annotations for Salmon

utils

Small scripts and wrapper around tools to deal with genomics data.

RNAseq_pipeline

Pipeline for downloading and processing published RNA-seq datasets

WordOCR

Toy example of optical character recognition implemented with OpenCV

WigglePlotR_old

A tool to create wiggle plots from RNA-Seq in R.

Blood_ATAC

Reanalysis of the ATAC-Seq data from the Corces et al. 2016 paper

ryanair-seat-allocation

How random are Ryanair's randomly allocated seats really?

pivotviewer.py

Tools to create PivotViewer collections in Python.

macrophage-tuQTLs

reviseAnnotations

R package to compare transcript annotations and split them into alternative transcription events.

flow_cytomtery_genetics

Analysis of macrophage cell surface expression of CD14, CD16 and CD206 proteins using flow cytometry.

colocWrapper

Helpful functions to streamline colocalisation analysis with coloc