hmgu-itg/variant_annotation hmgu-itg/variant_annotation

  • Stars
    star
    1
  • Language
    Python
  • Created over 4 years ago
  • Updated about 1 year ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
hmgu-itg/variant_annotation
github

hmgu-itg

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Variant annotation

More Repositories

1

VCF-liftover

Liftover VCF files
Shell
16
star
2

peakplotter

A tool to find and annotate signals in next-generation association studies
Python
6
star
3

burden_testing

A collection of scripts to run variant aggregation tests from whole-genome sequencing data.
Shell
6
star
4

VolosSummerSchool

Workshop and course materials for the annual Volos Summer School
Jupyter Notebook
6
star
5

metacarpa

Meta-analysis of genetic association studies accounting for relatedness
C++
5
star
6

man_qq_annotate

Creates Manhattan and QQ plots with annotated peaks.
R
4
star
7

plotburden

Interactive tool to visualise burdens of rare variants
HTML
4
star
8

T2D_SCZ

This repository contains a collection of scripts that were used to run post-GWAS, causal inference and pathway analyses for a genetic study on the type 2 diabetes and schizophrenia comorbidity. For any questions or running instructions, please contact [email protected].
R
4
star
9

Genetics-of-Osteoarthritis-1

Shell
3
star
10

HumanMolecularGenetics_TUM

Jupyter Notebook
2
star
11

T2D_OA

R
1
star
12

fast.coloc

R
1
star
13

association-scripts

A collection of non-generic scripts to perform all single-point associations in HELIC
Shell
1
star
14

single-point-analysis-pipeline

Python
1
star
15

Affiliation_formatter

A tool to create formatted author and affiliation list for publications based on excel table.
Python
1
star
16

challenge

Shell
1
star
17

general_purpose_scripts

General purpose scripts
Shell
1
star