Discover haesleinhuepf/blablado Open Source project

BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.

bia-bob

Accelerated Pixel and Object Classifiers (APOC)

apoc

Feature extraction for labeled objects in images using regionprops from scikit-image

napari-skimage-regionprops

GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.

napari-accelerated-pixel-and-object-classification

devbio-napari

napari-assistant

Process and analyze surfaces using vedo in napari.

napari-process-points-and-surfaces

Generate markdown notebooks from ImageJ Macro

imagejmacromarkdown

Benchmarking Large Language Models for Bio-Image Analysis Code Generation

human-eval-bia

awesome-napari-plugins-that-are-not-on-the-napari-hub-yet

An AI-based story writer and Python library which uses OpenAI's chatGPT and Dall-E to generate PDFs with a story and a picture from a prompt and writes them into a PDF.

story-writer

napari-cupy-image-processing

A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.

napari-segment-blobs-and-things-with-membranes

Process images using SimpleITK in napari

napari-simpleitk-image-processing

napari-plot-profile

Gamified image segmentation quality estimation

the-segmentation-game

Optimize image processing workflows in napari

napari-workflow-optimizer

natari

Napari gaming

I2K2022-napari-workshop

git-bob uses AI to solve Github-issues. It runs inside the Github CI, no need to install anything on your computer.

git-bob

napari-workflows

A python script editor plugin for napari

napari-script-editor

napari-brightness-contrast

napari-tools-menu

Transfer surface layers between Napari and Blender.

napari-blender-bridge

Inspect relationships between napari-plugins in active workflows.

napari-workflow-inspector

Blog post: How to develop ImageJ Java plugins and Jythons scripts simultaneously from your IDE

run_jython_scripts_from_ide

An implementation of retrieval-augmented-generation (RAG) using numpy and OpenAI embeddings, with no clutter, for academic purposes

simple-rag

processing_imagej

napari-folder-browser

bia-tischi

Tracking particles in Napari, using the LapTrack library

napari-laptrack

A napari plugin for pixel classification using XGBoost.

napari-xgboost

napari-curtain

napari-pypistats

napari-manual-split-and-merge-labels

Browse folders and images in owncloud/nextcloud servers and open them using just a double-click!

napari-owncloud

NEUBIAS_TS11

napari-minimal-plugin

Open and save 3D image stacks as animated gifs in napari

napari-animated-gif-io

beetlesafari

label_neighbor_filters

A meta plugin for processing timelapse data timepoint by timepoint in napari

napari-time-slicer

Auto-generate python code from within napari to make napari-assistant compatible plugins

napari-assistant-plugin-generator

Generate PowerPoint files using chatGPT and Dall-E

git-bob-bioimage-analysis-example

prompting-pptx

napari-layer-details-display

A Jupyter kernel for communicating with large language models

ipy-llm-kernel

A library for feature extraction from 3D label images

spheri

looping_vision_and_image_generation

A simple Chat interface based on voila, OpenAI and llama-index that allows you to query information from documents using human language.

simple-chat-with-docs

Report of efforts in the Project "Seamless Integration of Quantitative Bio-Image Analysis Plugins"

napari-mahotas-image-processing

napari-oclrfc

hip_clij

napari-webcam

ptd

napari-plugin-integration

napari-generalized-histogram-thresholding

benchmarking_DoG

Control zoom, slicing and contrast windowing with mouse and touch screen

napari-mouse-controls

Use pyFAST's CPU/GPU-accelerated image processing from within napari.

napari-pyfast-image-processing