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BioImageAnalysisNotebooks
Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and morestackview
Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgetsbia-bob
BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.blablado
blablado is an extensible Assistant that listens to your voice and can execute custom Python functions you provided. It can speak as well.apoc
Accelerated Pixel and Object Classifiers (APOC)napari-skimage-regionprops
Feature extraction for labeled objects in images using regionprops from scikit-imagenapari-accelerated-pixel-and-object-classification
GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.devbio-napari
napari-assistant
napari-process-points-and-surfaces
Process and analyze surfaces using vedo in napari.imagejmacromarkdown
Generate markdown notebooks from ImageJ Macrohuman-eval-bia
Benchmarking Large Language Models for Bio-Image Analysis Code Generationawesome-napari-plugins-that-are-not-on-the-napari-hub-yet
story-writer
An AI-based story writer and Python library which uses OpenAI's chatGPT and Dall-E to generate PDFs with a story and a picture from a prompt and writes them into a PDF.napari-cupy-image-processing
napari-segment-blobs-and-things-with-membranes
A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.napari-simpleitk-image-processing
Process images using SimpleITK in naparinapari-plot-profile
the-segmentation-game
Gamified image segmentation quality estimationnapari-workflow-optimizer
Optimize image processing workflows in naparinatari
Napari gamingI2K2022-napari-workshop
git-bob
git-bob uses AI to solve Github-issues. It runs inside the Github CI, no need to install anything on your computer.napari-workflows
napari-script-editor
A python script editor plugin for naparinapari-brightness-contrast
napari-tools-menu
napari-blender-bridge
Transfer surface layers between Napari and Blender.napari-workflow-inspector
Inspect relationships between napari-plugins in active workflows.run_jython_scripts_from_ide
Blog post: How to develop ImageJ Java plugins and Jythons scripts simultaneously from your IDEsimple-rag
An implementation of retrieval-augmented-generation (RAG) using numpy and OpenAI embeddings, with no clutter, for academic purposesprocessing_imagej
napari-folder-browser
bia-tischi
napari-laptrack
Tracking particles in Napari, using the LapTrack librarynapari-xgboost
A napari plugin for pixel classification using XGBoost.napari-curtain
napari-pypistats
napari-manual-split-and-merge-labels
napari-owncloud
Browse folders and images in owncloud/nextcloud servers and open them using just a double-click!NEUBIAS_TS11
napari-minimal-plugin
napari-animated-gif-io
Open and save 3D image stacks as animated gifs in naparibeetlesafari
napari-time-slicer
A meta plugin for processing timelapse data timepoint by timepoint in naparinapari-assistant-plugin-generator
Auto-generate python code from within napari to make napari-assistant compatible pluginsgit-bob-bioimage-analysis-example
prompting-pptx
Generate PowerPoint files using chatGPT and Dall-Enapari-layer-details-display
ipy-llm-kernel
A Jupyter kernel for communicating with large language modelsspheri
A library for feature extraction from 3D label imageslooping_vision_and_image_generation
simple-chat-with-docs
A simple Chat interface based on voila, OpenAI and llama-index that allows you to query information from documents using human language.napari-mahotas-image-processing
napari-oclrfc
hip_clij
napari-webcam
ptd
napari-plugin-integration
Report of efforts in the Project "Seamless Integration of Quantitative Bio-Image Analysis Plugins"napari-generalized-histogram-thresholding
benchmarking_DoG
napari-mouse-controls
Control zoom, slicing and contrast windowing with mouse and touch screennapari-pyfast-image-processing
Use pyFAST's CPU/GPU-accelerated image processing from within napari.Love Open Source and this site? Check out how you can help us