-
Stars17
-
Rank 1,229,969 (Top 25 %)
-
LanguagePython
-
License
MIT License -
Created over 2 years ago
-
Updated almost 2 years ago
Reviews
There are no reviews yet. Be the first to send feedback to the community and the maintainers!
Repository Details
Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
More Repositories
1
class-resolver
๐ Lookup classes and instantiate them with stylePython
60
2
chembl-downloader
Write reproducible code for getting and processing ChEMBLJupyter Notebook
45
3
pystow
๐ Easily pick a place to store data for your Python code.Python
34
4
drugbank_downloader
Don't worry about DrugBank licensing - write code that knows how to download it automaticallyPython
27
5
cookiecutter-snekpack
๐ช A cookiecutter package for an enlightened python packagePython
26
6
autoreviewer
๐๏ธโ๐จ๏ธ Scientists often do the same bad stuff. Automate giving feedback during peer review.Python
19
7
pyrdle
Play Wordle in the CLI. Write an algorithm to play Wordle for you. Ruin all of the fun you've been having.Python
12
8
zenodo-client
A tool for automated uploading and version management of scientific data to ZenodoPython
10
9
onto2nx
Converts OWL ontologies and OBO to NetworkX GraphsPython
9
10
curies4j
๐ธ Idiomatic conversion between URIs and compact URIs (CURIEs)Java
9
11
ols-client
๐ก Unified access to OLS instances like from the EBI and TIBPython
7
12
rhea-fingerprints
Automatically generate differential reaction fingerprints on reactions in RheaPython
6
13
pybacting
A Python wrapper around Bacting (https://github.com/egonw/bacting)Python
6
14
quickstatements_client
A data model and client for QuickStatements (for Wikidata)Python
6
15
more_click
Extra stuff for click I use in basically every repoPython
5
16
geometric-graphs
Generate knowledge graphs with interesting geometries, like latticesPython
5
17
nrl
Network Representation Learning in Python with igraphPython
4
18
authorship
๐ข Generate publication-ready authorship lists via Google Sheets and morePython
4
19
semantic-pydantic
Annotate data models in Pydantic and APIs in FastAPI with the Bioregistry to make them more FAIRPython
4
20
ontoportal-client
๐ก Unified access to OntoPortal instances like BioPortal, AgroPortal, and EcoPortalPython
4
21
cthoyt.github.io
My personal website, served at https://cthoyt.comHTML
3
22
nsockg
"Not Scared of Chemistry" Knowledge GraphPython
3
23
opencheck-embed
Graph-based embedding of Twitter followers in OpenCheckPython
3
24
unittest-templates
Write less unittest boilerplatePython
3
25
twin-identifier-analysis
How many local unique identifiers overlap between each biomedical vocabulary in the Bioregistry?Jupyter Notebook
2
26
citation-url
Parse URLs for DOIs, PubMed identifiers, PMC identifiers, arXiv identifiers, etc.Python
2
27
obo-community-health
๐ซ Check the OBO Foundry repositories to see what's going onPython
2
28
rorio
Convert the Research Organization Registry (ROR) into an OWL instance ontologyPython
2
29
orcidio
๐จ Make a subset of ORCID available as an OWL ontologyPython
2
30
depmap_downloader
Reproducibly download the latest version of various DepMap datasetsPython
2
31
flask-celery-docker-demo
A short demo on how to process files with Flask and Celery inside DockerPython
2
32
embeddingdb
A database for storing and comparing entity embeddingsPython
1
33
chemrxiv-summarize
Summarize usage of ChemRxiv by using Figshare's API endpointPython
1
34
vsmo
Revival of the Vector Surveillance and Management Ontology
1
35
chendi
Chemical Entities of Neurodegenerative Disease Interest
1
36
translational-toys
Knowledge graphs representing geometric shapes matched to knowledge graph embedding models to learn themPython
1
37
schoolwork
โ Code I've written for classes in schoolRacket
1
38
biocuration-diversity-search
Find biocurators that aren't from Australia, Canada, USA, or western EuropePython
1
39
dotfiles
My dot filesPython
1
40
biomodels-metadata-analysis
Generate a summary of metadata annotations in the BioModels databasePython
1
41
orcid_downloader
Get ORCID in bulk and free it from XMLJupyter Notebook
1
42
more_node2vec
Python
1
43
pydeogram
Generate Ideograms using ideogram.js in PythonPython
1
44
obo-foundry-graph
Demonstrate combining all OBO Foundry ontologies via Bioregistry, Bioontologies, and ROBOTPython
1
45
n2t-ark-resolver
Re-implement N2T's ARK resolver using curies (https://github.com/cthoyt/curies/)Python
1
46
apicuron-client
A python client for interacting with the APICURON curation metadatabase's RESTful APIPython
1