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class-resolver
π Lookup classes and instantiate them with stylechembl-downloader
Write reproducible code for getting and processing ChEMBLpystow
π Easily pick a place to store data for your Python code.doctoral-thesis
π Generation and Applications of Knowledge Graphs in Systems and Networks Biologydrugbank_downloader
Don't worry about DrugBank licensing - write code that knows how to download it automaticallycookiecutter-snekpack
πͺ A cookiecutter package for an enlightened python packageautoreviewer
ποΈβπ¨οΈ Scientists often do the same bad stuff. Automate giving feedback during peer review.umls_downloader
Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automaticallypyrdle
Play Wordle in the CLI. Write an algorithm to play Wordle for you. Ruin all of the fun you've been having.ols-client
π‘ Unified access to OLS instances like from the EBI and TIBzenodo-client
A tool for automated uploading and version management of scientific data to Zenodoonto2nx
Converts OWL ontologies and OBO to NetworkX Graphscuries4j
πΈ Idiomatic conversion between URIs and compact URIs (CURIEs)quickstatements_client
A data model and client for QuickStatements (for Wikidata)rhea-fingerprints
Automatically generate differential reaction fingerprints on reactions in Rheapybacting
A Python wrapper around Bacting (https://github.com/egonw/bacting)more_click
Extra stuff for click I use in basically every repogeometric-graphs
Generate knowledge graphs with interesting geometries, like latticesnrl
Network Representation Learning in Python with igraphauthorship
π’ Generate publication-ready authorship lists via Google Sheets and moresemantic-pydantic
Annotate data models in Pydantic and APIs in FastAPI with the Bioregistry to make them more FAIRontoportal-client
π‘ Unified access to OntoPortal instances like BioPortal, AgroPortal, and EcoPortalcthoyt.github.io
My personal website, served at https://cthoyt.comnsockg
"Not Scared of Chemistry" Knowledge Graphopencheck-embed
Graph-based embedding of Twitter followers in OpenCheckorcid_downloader
Get ORCID in bulk and free it from XMLunittest-templates
Write less unittest boilerplatetwin-identifier-analysis
How many local unique identifiers overlap between each biomedical vocabulary in the Bioregistry?citation-url
Parse URLs for DOIs, PubMed identifiers, PMC identifiers, arXiv identifiers, etc.rorio
Convert the Research Organization Registry (ROR) into an OWL instance ontologyorcidio
π¨ Make a subset of ORCID available as an OWL ontologydepmap_downloader
Reproducibly download the latest version of various DepMap datasetsflask-celery-docker-demo
A short demo on how to process files with Flask and Celery inside Dockerembeddingdb
A database for storing and comparing entity embeddingschemrxiv-summarize
Summarize usage of ChemRxiv by using Figshare's API endpointvsmo
Revival of the Vector Surveillance and Management Ontologychendi
Chemical Entities of Neurodegenerative Disease Interestschoolwork
β Code I've written for classes in schooltranslational-toys
Knowledge graphs representing geometric shapes matched to knowledge graph embedding models to learn thembiocuration-diversity-search
Find biocurators that aren't from Australia, Canada, USA, or western Europedotfiles
My dot filesbiomodels-metadata-analysis
Generate a summary of metadata annotations in the BioModels databasemore_node2vec
pydeogram
Generate Ideograms using ideogram.js in Pythonobo-foundry-graph
Demonstrate combining all OBO Foundry ontologies via Bioregistry, Bioontologies, and ROBOTn2t-ark-resolver
Re-implement N2T's ARK resolver using curies (https://github.com/cthoyt/curies/)apicuron-client
A python client for interacting with the APICURON curation metadatabase's RESTful APIflask-dance-with-redirects
Extend Flask-Dance to handle URL redirectsLove Open Source and this site? Check out how you can help us