cthoyt/translational-toys cthoyt/translational-toys

  • Stars
    star
    1
  • Language
    Python
  • License
    MIT License
  • Created over 3 years ago
  • Updated about 3 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
cthoyt/translational-toys
github

cthoyt

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Knowledge graphs representing geometric shapes matched to knowledge graph embedding models to learn them

More Repositories

1

class-resolver

🔍 Lookup classes and instantiate them with style
Python
62
star
2

chembl-downloader

Write reproducible code for getting and processing ChEMBL
Jupyter Notebook
45
star
3

pystow

👜 Easily pick a place to store data for your Python code.
Python
36
star
4

doctoral-thesis

📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology
TeX
29
star
5

drugbank_downloader

Don't worry about DrugBank licensing - write code that knows how to download it automatically
Python
27
star
6

cookiecutter-snekpack

🍪 A cookiecutter package for an enlightened python package
Python
26
star
7

autoreviewer

👁️‍🗨️ Scientists often do the same bad stuff. Automate giving feedback during peer review.
Python
21
star
8

umls_downloader

Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
Python
17
star
9

pyrdle

Play Wordle in the CLI. Write an algorithm to play Wordle for you. Ruin all of the fun you've been having.
Python
12
star
10

ols-client

🎡 Unified access to OLS instances like from the EBI and TIB
Python
11
star
11

zenodo-client

A tool for automated uploading and version management of scientific data to Zenodo
Python
10
star
12

onto2nx

Converts OWL ontologies and OBO to NetworkX Graphs
Python
9
star
13

curies4j

🐸 Idiomatic conversion between URIs and compact URIs (CURIEs)
Java
9
star
14

quickstatements_client

A data model and client for QuickStatements (for Wikidata)
Python
8
star
15

rhea-fingerprints

Automatically generate differential reaction fingerprints on reactions in Rhea
Python
6
star
16

pybacting

A Python wrapper around Bacting (https://github.com/egonw/bacting)
Python
6
star
17

more_click

Extra stuff for click I use in basically every repo
Python
5
star
18

geometric-graphs

Generate knowledge graphs with interesting geometries, like lattices
Python
5
star
19

nrl

Network Representation Learning in Python with igraph
Python
4
star
20

authorship

🚢 Generate publication-ready authorship lists via Google Sheets and more
Python
4
star
21

semantic-pydantic

Annotate data models in Pydantic and APIs in FastAPI with the Bioregistry to make them more FAIR
Python
4
star
22

ontoportal-client

🎡 Unified access to OntoPortal instances like BioPortal, AgroPortal, and EcoPortal
Python
4
star
23

cthoyt.github.io

My personal website, served at https://cthoyt.com
HTML
3
star
24

nsockg

"Not Scared of Chemistry" Knowledge Graph
Python
3
star
25

opencheck-embed

Graph-based embedding of Twitter followers in OpenCheck
Python
3
star
26

orcid_downloader

Get ORCID in bulk and free it from XML
Python
3
star
27

unittest-templates

Write less unittest boilerplate
Python
3
star
28

twin-identifier-analysis

How many local unique identifiers overlap between each biomedical vocabulary in the Bioregistry?
Jupyter Notebook
2
star
29

citation-url

Parse URLs for DOIs, PubMed identifiers, PMC identifiers, arXiv identifiers, etc.
Python
2
star
30

obo-community-health

🫀 Check the OBO Foundry repositories to see what's going on
Python
2
star
31

rorio

Convert the Research Organization Registry (ROR) into an OWL instance ontology
Python
2
star
32

orcidio

🐨 Make a subset of ORCID available as an OWL ontology
Python
2
star
33

depmap_downloader

Reproducibly download the latest version of various DepMap datasets
Python
2
star
34

flask-celery-docker-demo

A short demo on how to process files with Flask and Celery inside Docker
Python
2
star
35

embeddingdb

A database for storing and comparing entity embeddings
Python
1
star
36

chemrxiv-summarize

Summarize usage of ChemRxiv by using Figshare's API endpoint
Python
1
star
37

vsmo

Revival of the Vector Surveillance and Management Ontology
1
star
38

chendi

Chemical Entities of Neurodegenerative Disease Interest
1
star
39

schoolwork

✎ Code I've written for classes in school
Racket
1
star
40

biocuration-diversity-search

Find biocurators that aren't from Australia, Canada, USA, or western Europe
Python
1
star
41

dotfiles

My dot files
Python
1
star
42

biomodels-metadata-analysis

Generate a summary of metadata annotations in the BioModels database
Python
1
star
43

more_node2vec

Python
1
star
44

pydeogram

Generate Ideograms using ideogram.js in Python
Python
1
star
45

obo-foundry-graph

Demonstrate combining all OBO Foundry ontologies via Bioregistry, Bioontologies, and ROBOT
Python
1
star
46

n2t-ark-resolver

Re-implement N2T's ARK resolver using curies (https://github.com/cthoyt/curies/)
Python
1
star
47

apicuron-client

A python client for interacting with the APICURON curation metadatabase's RESTful API
Python
1
star
48

flask-dance-with-redirects

Extend Flask-Dance to handle URL redirects
Python
1
star