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  • Created about 8 years ago
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Repository Details

resources for faculty

The-world-of-faculty

Some resources for faculty postion application and grants writing.

Stay in the current of literatures.

submit to journals and funding agencies

Time planning

review a paper

Data plan

Teaching

fundings

manage a lab

collabration

recruiting

training

conferences

collaborative writing

digital tools for organizing a computational biology lab

collected from this twitter thread https://twitter.com/tangming2005/status/1230568527033012225

  • basecamp for tracking progress of projects. Github integration using zapier

"We use Basecamp in my lab, with GitHub integration via Zapier" -- Naupaka Zimmerman

"We use basecamp at HBC, it helps to track progress, n communicate with collaborator. For code tracking we use github. Though for my personal use, I hv jupyter notebook for code, Evernote for docs,and full Analysis I build docker for each project. This gives me peace" -- Preeti Aahir

  • github + zenhub project management for github. "We're trying out gitbook for the group documentation and working policies, etc. In addition, we use @ZenHub because of its tight GitHub integration to track projects" -- Moritz E. Beber

  • trello group working, organize projects.

"I use Trello for organisation and push my collaborators to use it. It helps keeping tasks, code, input, output & comments organised. We have common conda envs on the cluster and a place to store scripts. GitHub would be better for scripts but it's a lot to learn for some people."

"But I think that everything could be moved to @trello with a github integration and links to input data on shared folders on the HPC (so that large files are not stored on the Trello boards). Also it's free (compared to http://Monday.com)."

--Gautier Richard

  • Notion All-in-one workspace. "We have a general lab section with boards for expectations, on boarding, and getting started with the HPC. Each trainee then has their own long term goals boards and separate projects board." -- Nicholas Mancuso

  • github wiki for documenting projects.

"Recently commenced attempt at this is to use a github repo with the wiki as the guide (onboard routines), and possibly the repo itself for useful scripts" --Kieran Campbell

  • gitbook for other documenting purposes. onboard routine: e.g. HPC setup. pipeline running.

"We're trying out gitbook for the group documentation and working policies, etc. In addition, we use @ZenHub because of its tight GitHub integration to track projects" -- Moritz E. Beber

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