Ming Tang (@crazyhottommy)

Top repositories

1

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science
Shell
1,143
star
2

RNA-seq-analysis

RNAseq analysis notes from Ming Tang
Python
867
star
3

ChIP-seq-analysis

ChIP-seq analysis notes from Ming Tang
Python
670
star
4

scRNAseq-analysis-notes

scRNAseq analysis notes from Ming Tang
626
star
5

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang
452
star
6

awesome_spatial_omics

tools and notes for spatial omics
209
star
7

The-world-of-faculty

resources for faculty
207
star
8

TCR-BCR-seq-analysis

T/B cell receptor sequencing analysis notes
202
star
9

DNA-seq-analysis

DNA sequencing analysis notes from Ming Tang
Shell
139
star
10

scATACseq-analysis-notes

my notes for scATACseq analysis
113
star
11

pyflow-ChIPseq

a snakemake pipeline to process ChIP-seq files from GEO or in-house
Python
101
star
12

scclusteval

Single Cell Cluster Evaluation
R
85
star
13

pyflow-ATACseq

ATAC-seq snakemake pipeline
Python
82
star
14

DNA-methylation-analysis

DNA methylation analysis notes from Ming Tang
78
star
15

machine-learning-resource

70
star
16

papers_with_data_to_mine

published papers with a lot of data
61
star
17

oneliner_100day_challenge

Bioinformatics one-liner for 100 days
43
star
18

scATACutils

R/Bioconductor package for working with 10x scATACseq data
R
38
star
19

scRNA-seq-workshop-Fall-2019

Harvard FAS informatics scRNAseq workshop website
R
36
star
20

biotech_resource

some resources for startup companies
36
star
21

compbio_tutorials

My youtube programming scripts
HTML
33
star
22

compbio_resources_chatomics

24
star
23

pyflow-RNAseq

RNAseq pipeline based on snakemake
Python
22
star
24

Machine_learning_drug_discovery

21
star
25

awesome-long-reads

tools and notes for long reads analysis
19
star
26

pyflow-scATACseq

snakemake workflow for post-processing scATACseq data
Python
19
star
27

crazyhottommy

17
star
28

Coursera_Bioinformatics_for_Beginners

python scripts for the Coursera Bioinformatics for Beginners
Python
17
star
29

pyflow-cellranger

A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data
Python
15
star
30

scripts-general-use

HTML
15
star
31

single-cell-DNAseq-notes

14
star
32

pyflow_seurat_parameter

cluster stability measurement by subsampling and reclustering with Seurat V3 and V4
R
11
star
33

immunotherapy_scRNAseq_papers

11
star
34

CV

my CV using pagedown
JavaScript
10
star
35

awesome-single-cell-proteomics

9
star
36

mixed_histology_lung_cancer

8
star
37

cloud_computing_resources

7
star
38

MIT6.00.1x-Introduction-to-Computer-Science-and-Programming-Using-Python

my notes for the homework
Python
5
star
39

immunology_tools

5
star
40

pyflow-single-cell

single-cell RNAseq ATACseq processing pipeline
Python
5
star
41

writing-tips

5
star
42

scATACtools

R, python, unix tools for 10x scATACseq data
R
5
star
43

wholebrain_docker

docker file for wholebrain http://www.wholebrainsoftware.org/cms/installing-wholebrain-on-ubuntudebian/
Dockerfile
5
star
44

Genrich_compare

snakemake workflow comparing Genrich and MACS2
Python
5
star
45

phantompeakqualtools

Automatically exported from code.google.com/p/phantompeakqualtools
R
4
star
46

computation_wiki

Tommy's computation wiki
HTML
4
star
47

flowcytometry_analysis_notes

4
star
48

mixing_histology_lung_cancer

HTML
3
star
49

pyflow-chromForest

snakemake workflow for random forest based feature selection on chromHMM data
Python
3
star
50

odyssey_dot_files

my dot files on Harvard Odyssey HPC
Shell
3
star
51

primer3_scATAC_peaks

batch design primers for scATACseq differential peaks
Shell
3
star
52

seurat_v3_dockerfile

docker file for seurat v3
Dockerfile
2
star
53

PRADA_pipeline_Verhaak_lab

Shell
2
star
54

STAT115_HW

Tommy's homework
2
star
55

rocker_tidyvese_jpeg_cairo

docker file to extend rocker tidyverse
Dockerfile
2
star
56

ucn3_neuron_microarray_analysis

2
star
57

epigenomics_concept_learning

2
star
58

CIDC_single_cell

snakemake single cell pipeline for CIDC
Python
2
star
59

ucn3_neuron_microarray

2
star
60

EvaluateSingleCellClustering

examples for using scclusteval
R
2
star
61

bulk-RNAseq-workshop

HTML
2
star
62

compbio_challenges

2
star
63

machine_learning_datasets

2
star
64

rosalind_problems_python_solutions

Python
1
star
65

Epigenome_RoadTrip

my RoadTrip project
Python
1
star
66

data-science-machine-learning-project

HTML
1
star
67

ChIP-seq-carpentry

Development of the ChIPseq workshop for Data Carpentry
Python
1
star
68

one-click-hugo-cms

SCSS
1
star
69

nextjs-blog-theme

JavaScript
1
star
70

hodgkin_lymphoma_publication_scRNAseq_analysis

Jupyter Notebook
1
star