Discover @crazyhottommy Open Source projects

Ming Tang (@crazyhottommy)

crazyhottommy

Stars
5,774
Global Rank 4,479 (Top 0.2 %)
Followers 2,629
Following 43
Registered over 11 years ago
Most used languages

Python
39.0 %

R
17.1 %

HTML
14.6 %

Shell
12.2 %

Dockerfile
7.3 %

JavaScript
4.9 %

SCSS 2.4 %

Jupyter Notebook
2.4 %
Location 🇺🇸 United States
Country Total Rank 2,262
Country Ranking

Shell
206

R
285

Python
847

Dockerfile
1,114

HTML
2,618

SCSS 3,031

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

RNA-seq-analysis

RNAseq analysis notes from Ming Tang

ChIP-seq-analysis

ChIP-seq analysis notes from Ming Tang

scRNAseq-analysis-notes

scRNAseq analysis notes from Ming Tang

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

awesome_spatial_omics

tools and notes for spatial omics

The-world-of-faculty

resources for faculty

TCR-BCR-seq-analysis

T/B cell receptor sequencing analysis notes

DNA-seq-analysis

DNA sequencing analysis notes from Ming Tang

scATACseq-analysis-notes

my notes for scATACseq analysis

pyflow-ChIPseq

a snakemake pipeline to process ChIP-seq files from GEO or in-house

scclusteval

Single Cell Cluster Evaluation

pyflow-ATACseq

ATAC-seq snakemake pipeline

DNA-methylation-analysis

DNA methylation analysis notes from Ming Tang

machine-learning-resource

papers_with_data_to_mine

published papers with a lot of data

oneliner_100day_challenge

Bioinformatics one-liner for 100 days

scATACutils

R/Bioconductor package for working with 10x scATACseq data

scRNA-seq-workshop-Fall-2019

Harvard FAS informatics scRNAseq workshop website

biotech_resource

some resources for startup companies

compbio_tutorials

My youtube programming scripts

compbio_resources_chatomics

pyflow-RNAseq

RNAseq pipeline based on snakemake

Machine_learning_drug_discovery

awesome-long-reads

tools and notes for long reads analysis

pyflow-scATACseq

snakemake workflow for post-processing scATACseq data

crazyhottommy

Coursera_Bioinformatics_for_Beginners

python scripts for the Coursera Bioinformatics for Beginners

pyflow-cellranger

A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data

scripts-general-use

single-cell-DNAseq-notes

pyflow_seurat_parameter

cluster stability measurement by subsampling and reclustering with Seurat V3 and V4

immunotherapy_scRNAseq_papers

CV

my CV using pagedown

awesome-single-cell-proteomics

mixed_histology_lung_cancer

cloud_computing_resources

MIT6.00.1x-Introduction-to-Computer-Science-and-Programming-Using-Python

my notes for the homework

immunology_tools

pyflow-single-cell

single-cell RNAseq ATACseq processing pipeline

writing-tips

scATACtools

R, python, unix tools for 10x scATACseq data

wholebrain_docker

docker file for wholebrain http://www.wholebrainsoftware.org/cms/installing-wholebrain-on-ubuntudebian/

Genrich_compare

snakemake workflow comparing Genrich and MACS2

phantompeakqualtools

Automatically exported from code.google.com/p/phantompeakqualtools

computation_wiki

Tommy's computation wiki

flowcytometry_analysis_notes

mixing_histology_lung_cancer

pyflow-chromForest

snakemake workflow for random forest based feature selection on chromHMM data

odyssey_dot_files

my dot files on Harvard Odyssey HPC

primer3_scATAC_peaks

batch design primers for scATACseq differential peaks

seurat_v3_dockerfile

docker file for seurat v3

PRADA_pipeline_Verhaak_lab

STAT115_HW

Tommy's homework

rocker_tidyvese_jpeg_cairo

docker file to extend rocker tidyverse

ucn3_neuron_microarray_analysis

epigenomics_concept_learning

CIDC_single_cell

snakemake single cell pipeline for CIDC

ucn3_neuron_microarray

EvaluateSingleCellClustering

examples for using scclusteval

bulk-RNAseq-workshop

compbio_challenges

machine_learning_datasets

rosalind_problems_python_solutions

Epigenome_RoadTrip

my RoadTrip project

data-science-machine-learning-project

ChIP-seq-carpentry

Development of the ChIPseq workshop for Data Carpentry

one-click-hugo-cms

nextjs-blog-theme

hodgkin_lymphoma_publication_scRNAseq_analysis

Jupyter Notebook