brwnj/fqc

Stars
4
Rank 3,242,825 (Top 66 %)
Language
JavaScript
License
MIT License
Created almost 8 years ago
Updated almost 7 years ago

brwnj/fqc

brwnj

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Extensible quality control dashboard built around FASTQ assessment.

bcl2fastq

NextSeq specific bcl2fastq2 wrapper.

covviz

Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata

fastq-multx

Demultiplexes a fastq.

umitools

Tools to handle reads sequenced with unique molecular identifiers (UMIs).

idplot

compare sequences to a shared root reference sequence.

smoove-nf

Nextflow implementation of the smoove workflow and other tools for SV calling and QC

fastq-join

Squared distance for anchored alignment joiner of ea-utils.

freebayes-nf

a better freebayes-parallel

covdist

simple coverage distribution profile of aligned samples. useful for sequencing center feedback and topoffs.

hundo

Amplicon processing protocols

seqanno

Retrieves read counts originating at a given genomic sequence and allows further characterization.

polya

scripts associated with identifying polya cleavage preference

blastdbget

Download Blast databases from ftp.ncbi.nlm.nih.gov/blast/db, validate, and extract.

repertoire

Pipelines for assembling and assessing T and B cell receptor repertoires.

relatively

📊 Plotly abundance figure with absolute and relative abundances across a hierarchy

Jupyter Notebook

binder

mybinder.org - open testing.

Jupyter Notebook

gdemux

demultiplex into groups (subsets) rather than individual sample files, by barcode